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LOC100052006 MHC class II DR-beta chain [ Equus caballus (horse) ]

Gene ID: 100052006, updated on 18-Dec-2024

Summary

Gene symbol
LOC100052006
Gene description
MHC class II DR-beta chain
See related
Ensembl:ENSECAG00000022072
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Also known as
DRB; ELA-DRB; ELA-DRB1; Eqca-DRB1
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Genomic context

See LOC100052006 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_12 current TB-T2T (GCF_041296265.1) 20 NC_091703.1 (36136718..36236138, complement)
RS_2024_08 previous assembly EquCab3.0 (GCF_002863925.1) 20 NC_009163.3 (33620484..33631767, complement)

Chromosome 20 - NC_091703.1Genomic Context describing neighboring genes Neighboring gene butyrophilin like 2 Neighboring gene uncharacterized LOC138919636 Neighboring gene uncharacterized LOC111769304 Neighboring gene MHC class II DR alpha chain Neighboring gene MHC class II DQ-alpha chain Neighboring gene uncharacterized LOC138919472 Neighboring gene MHC class II DQ-beta chain Neighboring gene uncharacterized LOC138919637

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of MHC class II protein complex PubMed 
located_in membrane PubMed 

General protein information

Preferred Names
MHC class II DR-beta chain
Names
MHC class II antigen
major histocompatibility complex

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142811.1NP_001136283.1  MHC class II DR-beta chain precursor

    See identical proteins and their annotated locations for NP_001136283.1

    Status: PROVISIONAL

    Source sequence(s)
    PJAA01000021
    UniProtKB/TrEMBL
    F7BCC3, K9MDS5
    Related
    ENSECAP00000039577.2, ENSECAT00000041912.3
    Conserved Domains (2) summary
    cd05766
    Location:126219
    IgC_MHC_II_beta; Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain
    pfam00969
    Location:43116
    MHC_II_beta; Class II histocompatibility antigen, beta domain

RefSeqs of Annotated Genomes: GCF_041296265.1-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TB-T2T Primary Assembly

Genomic

  1. NC_091703.1 Reference TB-T2T Primary Assembly

    Range
    36136718..36236138 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_070245391.1XP_070101492.1  MHC class II DR-beta chain

  2. XM_070245393.1XP_070101494.1  MHC class II DR-beta chain

  3. XM_070245394.1XP_070101495.1  MHC class II DR-beta chain

  4. XM_070245392.1XP_070101493.1  MHC class II DR-beta chain

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