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LOC100279508 uncharacterized LOC100279508 [ Zea mays ]

Gene ID: 100279508, updated on 27-Nov-2024

Summary

Gene symbol
LOC100279508
Gene description
uncharacterized LOC100279508
Locus tag
ZEAMMB73_Zm00001d048669
See related
EnsemblRapid:Zm00001eb165230
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G146192
Annotation information
Annotation category: suggests misassembly
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Genomic context

See LOC100279508 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (3333283..3336549)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (3057612..3060877)

Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103652710 Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene pentatricopeptide repeat-containing protein At1g09190 Neighboring gene uncharacterized LOC100285663

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in plant-type cell wall PubMed 

General protein information

Preferred Names
Probable beta-D-xylosidase 2
Names
Auxin-induced beta-glucosidase
putative O-Glycosyl hydrolase superfamily protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001152508.1NP_001145980.1  Probable beta-D-xylosidase 2 precursor

    See identical proteins and their annotated locations for NP_001145980.1

    Status: PROVISIONAL

    Source sequence(s)
    BT054367
    UniProtKB/TrEMBL
    A0A3L6F0I2, B7ZYH5
    Related
    Zm00001eb165230_P001, Zm00001eb165230_T001
    Conserved Domains (3) summary
    PLN03080
    Location:27787
    PLN03080; Probable beta-xylosidase; Provisional
    pfam14310
    Location:707779
    Fn3-like; Fibronectin type III-like domain
    cl07971
    Location:102358
    Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    3333283..3336549
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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