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astn1 astrotactin 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100690591, updated on 8-Mar-2024

Summary

Gene symbol
astn1
Gene description
astrotactin 1
See related
Ensembl:ENSONIG00000016661
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
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Genomic context

See astn1 in Genome Data Viewer
Location:
chromosome: LG18
Exon count:
24
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG18 NC_031982.2 (3489582..3908283)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG18 NC_031982.1 (3407222..3826106)

Linkage Group LG18 - NC_031982.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109195370 Neighboring gene uncharacterized LOC112842918 Neighboring gene bone morphogenetic protein/retinoic acid inducible neural-specific 2 Neighboring gene uncharacterized LOC106098812 Neighboring gene uncharacterized LOC109195668 Neighboring gene pappalysin 2 Neighboring gene COP1 E3 ubiquitin ligase

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031982.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    3489582..3908283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025900129.1XP_025755914.1  astrotactin-1 isoform X4

    UniProtKB/TrEMBL
    A0A669DS94
    Conserved Domains (2) summary
    pfam14670
    Location:673720
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl02616
    Location:8251015
    MACPF; MAC/Perforin domain
  2. XM_019348325.2XP_019203870.1  astrotactin-1 isoform X5

    UniProtKB/TrEMBL
    A0A669DS94
  3. XM_019348326.2XP_019203871.1  astrotactin-1 isoform X6

    UniProtKB/TrEMBL
    A0A669DS94
  4. XM_005457968.4XP_005458025.1  astrotactin-1 isoform X7

    UniProtKB/TrEMBL
    A0A669DS94
    Conserved Domains (3) summary
    pfam14670
    Location:668715
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    pfam18411
    Location:11641256
    Annexin_like; Annexin-like domain
    cl02616
    Location:8201010
    MACPF; MAC/Perforin domain
  5. XM_019348323.2XP_019203868.1  astrotactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A669DS94
  6. XM_005457966.4XP_005458023.1  astrotactin-1 isoform X2

    UniProtKB/TrEMBL
    A0A669DS94
    Conserved Domains (3) summary
    pfam14670
    Location:682729
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    pfam18411
    Location:11781270
    Annexin_like; Annexin-like domain
    cl02616
    Location:8341024
    MACPF; MAC/Perforin domain
  7. XM_005457969.4XP_005458026.1  astrotactin-1 isoform X8

    UniProtKB/TrEMBL
    A0A669BQN6
    Conserved Domains (3) summary
    pfam14670
    Location:633680
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    pfam18411
    Location:11291221
    Annexin_like; Annexin-like domain
    cl02616
    Location:785975
    MACPF; MAC/Perforin domain
  8. XM_005457970.4XP_005458027.1  astrotactin-1 isoform X9

    UniProtKB/TrEMBL
    A0A669BQN6
    Conserved Domains (3) summary
    pfam14670
    Location:632679
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    pfam18411
    Location:11281220
    Annexin_like; Annexin-like domain
    cl02616
    Location:784974
    MACPF; MAC/Perforin domain
  9. XM_019348324.2XP_019203869.1  astrotactin-1 isoform X3

    UniProtKB/TrEMBL
    A0A669DS94
  10. XM_013276338.3XP_013131792.1  astrotactin-1 isoform X10

    UniProtKB/TrEMBL
    A0A669DS94
    Related
    ENSONIP00000020988.1, ENSONIT00000021007.2
    Conserved Domains (3) summary
    pfam14670
    Location:659706
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    pfam18411
    Location:11551247
    Annexin_like; Annexin-like domain
    cl02616
    Location:8111001
    MACPF; MAC/Perforin domain
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