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LOC100701351 cadherin-related family member 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100701351, updated on 21-Dec-2023

Summary

Gene symbol
LOC100701351
Gene description
cadherin-related family member 1
See related
Ensembl:ENSONIG00000016056
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
cdhr1
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Genomic context

See LOC100701351 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
19
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG8 NC_031973.2 (11888193..11903719, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG8 NC_031973.1 (12539134..12554581, complement)

Linkage Group LG8 - NC_031973.2Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b Neighboring gene leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2 Neighboring gene growth hormone inducible transmembrane protein Neighboring gene carbohydrate (chondroitin 6) sulfotransferase 3b

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding PubMed 
enables calcium ion binding PubMed 
Component Evidence Code Pubs
part_of catenin complex PubMed 
located_in plasma membrane PubMed 

General protein information

Preferred Names
cadherin-related family member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031973.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    11888193..11903719 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025909987.1XP_025765772.1  cadherin-related family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A669BC40, I3KGI1
    Related
    ENSONIP00000020226.1, ENSONIT00000020243.2
    Conserved Domains (1) summary
    cd11304
    Location:141244
    Cadherin_repeat; Cadherin tandem repeat domain
  2. XM_003441903.5XP_003441951.2  cadherin-related family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A669BC40
    Conserved Domains (1) summary
    cd11304
    Location:142245
    Cadherin_repeat; Cadherin tandem repeat domain
  3. XM_005471388.4XP_005471445.1  cadherin-related family member 1 isoform X3

    UniProtKB/TrEMBL
    A0A669BC40
    Conserved Domains (1) summary
    cd11304
    Location:142245
    Cadherin_repeat; Cadherin tandem repeat domain
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