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Lama5 laminin subunit alpha 5 [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102029325, updated on 16-Nov-2024

Summary

Gene symbol
Lama5
Gene description
laminin subunit alpha 5
See related
Ensembl:ENSCLAG00000009241 RGD:8831957
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Annotation information
Annotation category: partial on reference assembly
Orthologs
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Genomic context

See Lama5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
79
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955528.1 (1713110..1753374)

NW_004955528.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S21 Neighboring gene uncharacterized LOC102029660 Neighboring gene ADRM1 26S proteasome ubiquitin receptor Neighboring gene oxysterol binding protein like 2 Neighboring gene uncharacterized LOC102003276

Genomic regions, transcripts, and products

Genomic Sequence:
NW_004955528.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

General gene information

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axon guidance PubMed 
involved_in cell adhesion PubMed 
involved_in regulation of cell adhesion PubMed 
involved_in regulation of cell migration PubMed 
involved_in regulation of embryonic development PubMed 
Component Evidence Code Pubs
located_in basement membrane PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955528.1 Reference ChiLan1.0 Primary Assembly

    Range
    1713110..1753374
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013507490.1XP_013362944.1  laminin subunit alpha-5 isoform X1

    UniProtKB/TrEMBL
    A0A8C2VC53
    Related
    ENSCLAP00000013378.1, ENSCLAT00000013530.1
    Conserved Domains (11) summary
    smart00180
    Location:489536
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:27742901
    LamG; Laminin G domain
    cd00055
    Location:671713
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:35143664
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00052
    Location:16841809
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:14331481
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:49293
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam06008
    Location:21802442
    Laminin_I; Laminin Domain I
    pfam06009
    Location:26332754
    Laminin_II; Laminin Domain II
    pfam16731
    Location:23762531
    GARP; Glutamic acid/alanine-rich protein of Trypanosoma
    cl19527
    Location:21202600
    SWIM; SWIM zinc finger
  2. XM_013507491.1XP_013362945.1  laminin subunit alpha-5 isoform X2

    UniProtKB/TrEMBL
    A0A8C2VC53
    Conserved Domains (11) summary
    smart00180
    Location:489536
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:27722899
    LamG; Laminin G domain
    cd00055
    Location:671713
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:35123662
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00052
    Location:16821807
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:14311479
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:49293
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam06008
    Location:21782440
    Laminin_I; Laminin Domain I
    pfam06009
    Location:26312752
    Laminin_II; Laminin Domain II
    pfam16731
    Location:23742529
    GARP; Glutamic acid/alanine-rich protein of Trypanosoma
    cl19527
    Location:21182598
    SWIM; SWIM zinc finger
  3. XM_013507492.1XP_013362946.1  laminin subunit alpha-5 isoform X3

    UniProtKB/TrEMBL
    A0A8C2VC53
    Conserved Domains (11) summary
    smart00180
    Location:489536
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:27292856
    LamG; Laminin G domain
    cd00055
    Location:626668
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:34693619
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00052
    Location:16391764
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:13881436
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:49293
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam06008
    Location:21352397
    Laminin_I; Laminin Domain I
    pfam06009
    Location:25882709
    Laminin_II; Laminin Domain II
    pfam16731
    Location:23312486
    GARP; Glutamic acid/alanine-rich protein of Trypanosoma
    cl19527
    Location:20752555
    SWIM; SWIM zinc finger
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