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elfn1a extracellular leucine-rich repeat and fibronectin type III domain containing 1a [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102294423, updated on 12-Sep-2024

Summary

Gene symbol
elfn1a
Gene description
extracellular leucine-rich repeat and fibronectin type III domain containing 1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Also known as
elfn1
Orthologs
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Genomic context

See elfn1a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582382.1 (1841516..1918639, complement)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179436.1 (1113986..1190949)

NW_024582382.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 8a Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 1 Neighboring gene mitochondrial rRNA methyltransferase 2 Neighboring gene transmembrane protein 184a Neighboring gene proteasome (prosome, macropain) assembly chaperone 3

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in plasma membrane PubMed 

General protein information

Preferred Names
protein ELFN1
Names
extracellular leucine rich repeat and fibronectin type III domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582382.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    1841516..1918639 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005920289.3XP_005920351.1  protein ELFN1

    UniProtKB/TrEMBL
    A0A3Q2UVK9
    Conserved Domains (5) summary
    smart00082
    Location:199235
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:68204
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:7494
    LRR_1; leucine-rich repeat [structural motif]
    pfam12799
    Location:142182
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:94153
    LRR_8; Leucine rich repeat
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