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LOC102779690 A disintegrin and metalloproteinase with thrombospondin motifs 5 [ Neolamprologus brichardi ]

Gene ID: 102779690, updated on 10-Mar-2024

Summary

Gene symbol
LOC102779690
Gene description
A disintegrin and metalloproteinase with thrombospondin motifs 5
See related
Ensembl:ENSNBRG00000008970
Gene type
protein coding
RefSeq status
MODEL
Organism
Neolamprologus brichardi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Lamprologini; Neolamprologus
Orthologs
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Genomic context

See LOC102779690 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current NeoBri1.0 (GCF_000239395.1) Unplaced Scaffold NW_006272133.1 (1345195..1363335, complement)

NW_006272133.1Genomic Context describing neighboring genes Neighboring gene amyloid beta (A4) precursor protein a Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif, 1 Neighboring gene sodium- and chloride-dependent GABA transporter 2-like Neighboring gene uncharacterized LOC118455319

Genomic regions, transcripts, and products

Genomic Sequence:
NW_006272133 Unplaced Scaffold Reference NeoBri1.0 Primary Assembly

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity PubMed 
enables zinc ion binding PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix PubMed 

General protein information

Preferred Names
A disintegrin and metalloproteinase with thrombospondin motifs 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neolamprologus brichardi Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NeoBri1.0 Primary Assembly

Genomic

  1. NW_006272133.1 Reference NeoBri1.0 Primary Assembly

    Range
    1345195..1363335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006804994.2XP_006805057.1  A disintegrin and metalloproteinase with thrombospondin motifs 5

    UniProtKB/TrEMBL
    A0A3Q4GWA7
    Related
    ENSNBRP00000011548.1, ENSNBRT00000011875.1
    Conserved Domains (6) summary
    smart00209
    Location:562614
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:260465
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam01421
    Location:260468
    Reprolysin; Reprolysin (M12B) family zinc metalloprotease
    pfam01562
    Location:58164
    Pep_M12B_propep; Reprolysin family propeptide
    pfam05986
    Location:726844
    ADAM_spacer1; ADAM-TS Spacer 1
    cl15456
    Location:478548
    ADAM_CR; ADAM cysteine-rich
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