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LOC103854567 probable pectate lyase 20 [ Brassica rapa (field mustard) ]

Gene ID: 103854567, updated on 7-Dec-2023

Summary

Gene symbol
LOC103854567
Gene description
probable pectate lyase 20
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica rapa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

See LOC103854567 in Genome Data Viewer
Location:
chromosome: A2
Exon count:
5
Annotation release Status Assembly Chr Location
103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A02 NC_024796.2 (27743750..27748654)
101 previous assembly Brapa_1.0 (GCF_000309985.1) A2 NC_024796.1 (23837335..23841229)

Chromosome A02 - NC_024796.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103854564 Neighboring gene sm-like protein LSM5 Neighboring gene 3-ketoacyl-CoA thiolase 5, peroxisomal Neighboring gene uncharacterized LOC103854568 Neighboring gene UPF0725 protein At3g19520 Neighboring gene cytosolic purine 5'-nucleotidase

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Brap_v3.01 Primary Assembly

Genomic

  1. NC_024796.2 Reference CAAS_Brap_v3.01 Primary Assembly

    Range
    27743750..27748654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009131505.3XP_009129753.1  probable pectate lyase 20

    UniProtKB/TrEMBL
    A0A3P5Y452, A0A3P6AIG8, M4DVX8
    Conserved Domains (1) summary
    smart00656
    Location:143338
    Amb_all; Amb_all domain
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