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LOC108213411 polygalacturonase At1g48100 [ Daucus carota subsp. sativus ]

Gene ID: 108213411, updated on 18-Jul-2024

Summary

Gene symbol
LOC108213411
Gene description
polygalacturonase At1g48100
Locus tag
DCAR_011235
Gene type
protein coding
RefSeq status
MODEL
Organism
Daucus carota subsp. sativus (sub-species: sativus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
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Genomic context

See LOC108213411 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 3 NC_030383.2 (48307870..48310471, complement)
100 previous assembly ASM162521v1 (GCF_001625215.1) 3 NC_030383.1 (33820672..33823296, complement)

Chromosome 3 - NC_030383.2Genomic Context describing neighboring genes Neighboring gene MYB-like transcription factor EOBII Neighboring gene peptide deformylase 1B, chloroplastic Neighboring gene uncharacterized LOC108211207 Neighboring gene probable polygalacturonase At3g15720

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

General protein information

Preferred Names
polygalacturonase At1g48100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DH1 v3.0 Primary Assembly

Genomic

  1. NC_030383.2 Reference DH1 v3.0 Primary Assembly

    Range
    48307870..48310471 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017385200.2XP_017240689.1  polygalacturonase At1g48100

    UniProtKB/TrEMBL
    A0A166B837
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