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LOC109112543 beta-2-microglobulin-like [ Cyprinus carpio (common carp) ]

Gene ID: 109112543, updated on 7-Dec-2023

Summary

Gene symbol
LOC109112543
Gene description
beta-2-microglobulin-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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Genomic context

See LOC109112543 in Genome Data Viewer
Location:
chromosome: B3
Exon count:
5
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) B3 NC_056599.1 (40676055..40678787, complement)
100 previous assembly common carp genome (GCF_000951615.1) 39 NC_031735.1 (246455..249305)

Chromosome B3 - NC_056599.1Genomic Context describing neighboring genes Neighboring gene HLA class II histocompatibility antigen, DP alpha 1 chain-like Neighboring gene uncharacterized LOC122136628 Neighboring gene HLA class II histocompatibility antigen, DP alpha 1 chain-like Neighboring gene uncharacterized LOC109112541

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of MHC class II protein complex PubMed 
located_in membrane PubMed 

General protein information

Preferred Names
beta-2-microglobulin-like; rano class II histocompatibility antigen, A beta chain-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056599.1 Reference ASM1834038v1 Primary Assembly

    Range
    40676055..40678787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042721011.1XP_042576945.1  rano class II histocompatibility antigen, A beta chain-like isoform X1

    UniProtKB/TrEMBL
    A0A8C1AYR4, A0A8C1KQR7, A0A8C1U9M9, A0A8C2KE54, A0A9R1SKX1
    Conserved Domains (2) summary
    smart00921
    Location:3298
    MHC_II_beta; Class II histocompatibility antigen, beta domain
    smart00407
    Location:130195
    IGc1; Immunoglobulin C-Type
  2. XM_042721012.1XP_042576946.1  beta-2-microglobulin-like isoform X2

    UniProtKB/TrEMBL
    A0A9Q9W532
    Conserved Domains (1) summary
    smart00407
    Location:56121
    IGc1; Immunoglobulin C-Type
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