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SEMA6B semaphorin 6B [ Sus scrofa (pig) ]

Gene ID: 110259360, updated on 17-Aug-2024

Summary

Official Symbol
SEMA6Bprovided by VGNC
Official Full Name
semaphorin 6Bprovided by VGNC
Primary source
VGNC:VGNC:92709
See related
Ensembl:ENSSSCG00000035176
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in subcutaneous adipose (RPKM 4.5), lung (RPKM 4.1) and 8 other tissues See more
Orthologs
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Genomic context

See SEMA6B in Genome Data Viewer
Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (74262303..74296386)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene myeloid derived growth factor Neighboring gene TNF alpha induced protein 8 like 1 Neighboring gene uncharacterized LOC110259361 Neighboring gene leucine rich alpha-2-glycoprotein 1 Neighboring gene perilipin 5

Genomic regions, transcripts, and products

Genomic Sequence:
NC_010444.4 Chromosome 2 Reference Sscrofa11.1 Primary Assembly

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General gene information

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular space PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    74262303..74296386
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021084052.1XP_020939711.1  semaphorin-6B isoform X2

    UniProtKB/TrEMBL
    A0A286ZSI0, A0A287AE84, A0A8D1HYE8, A0A8D1YD29
    Related
    ENSSSCP00000042128.2, ENSSSCT00000063984.2
    Conserved Domains (2) summary
    cd11267
    Location:57525
    Sema_6B; The Sema domain, a protein interacting module, of semaphorin 6B (Sema6B)
    cl15693
    Location:517547
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
  2. XM_021084051.1XP_020939710.1  semaphorin-6B isoform X1

    UniProtKB/TrEMBL
    A0A287AKK7, A0A8D1SBA5, A0A8D1YE71
    Conserved Domains (2) summary
    cd11267
    Location:74542
    Sema_6B; The Sema domain, a protein interacting module, of semaphorin 6B (Sema6B)
    cl15693
    Location:534564
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
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