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scn8aa sodium channel, voltage gated, type VIII, alpha subunit a [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112159074, updated on 10-Jul-2024

Summary

Gene symbol
scn8aa
Gene description
sodium channel, voltage gated, type VIII, alpha subunit a
See related
EnsemblRapid:ENSOMEG00005010111
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
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Genomic context

See scn8aa in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
30
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG7 NC_050518.1 (7546984..7593342)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096096.1 (13014355..13060762)

Linkage Group LG7 - NC_050518.1Genomic Context describing neighboring genes Neighboring gene disco-interacting protein 2 homolog Ba Neighboring gene transmembrane protease serine 11D Neighboring gene uncharacterized LOC112159599 Neighboring gene uncharacterized LOC112159556

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in axon PubMed 
located_in plasma membrane PubMed 
part_of voltage-gated sodium channel complex PubMed 

General protein information

Preferred Names
sodium channel, voltage gated, type VIII, alpha subunit a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050518.1 Reference ASM292280v2 Primary Assembly

    Range
    7546984..7593342
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024292916.2XP_024148684.1  sodium channel, voltage gated, type VIII, alpha subunit a isoform X1

    UniProtKB/TrEMBL
    A0A3B3CIR0
    Conserved Domains (6) summary
    cd13433
    Location:14481500
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11801456
    Ion_trans; Ion transport protein
    pfam06512
    Location:9731175
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:496670
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17631826
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    cl25549
    Location:417448
    ARGLU; Arginine and glutamate-rich 1
  2. XM_024292911.2XP_024148679.1  sodium channel, voltage gated, type VIII, alpha subunit a isoform X1

    UniProtKB/TrEMBL
    A0A3B3CIR0
    Conserved Domains (6) summary
    cd13433
    Location:14481500
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11801456
    Ion_trans; Ion transport protein
    pfam06512
    Location:9731175
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:496670
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17631826
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    cl25549
    Location:417448
    ARGLU; Arginine and glutamate-rich 1
  3. XM_024292912.2XP_024148680.1  sodium channel, voltage gated, type VIII, alpha subunit a isoform X2

    UniProtKB/TrEMBL
    A0A3B3CIR0
    Related
    ENSOMEP00005042955.1, ENSOMET00005048177.1
    Conserved Domains (6) summary
    cd13433
    Location:14481500
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11801456
    Ion_trans; Ion transport protein
    pfam06512
    Location:9731175
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:496670
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17631826
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    cl25549
    Location:417448
    ARGLU; Arginine and glutamate-rich 1
  4. XM_024292918.2XP_024148686.1  sodium channel, voltage gated, type VIII, alpha subunit a isoform X4

    UniProtKB/TrEMBL
    A0A3B3CIR0
    Related
    ENSOMEP00005043759.1, ENSOMET00005049571.1
    Conserved Domains (6) summary
    cd13433
    Location:14371489
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11691445
    Ion_trans; Ion transport protein
    pfam06512
    Location:9621164
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:496659
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17521815
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    cl25549
    Location:417448
    ARGLU; Arginine and glutamate-rich 1
  5. XM_024292917.2XP_024148685.1  sodium channel, voltage gated, type VIII, alpha subunit a isoform X3

    UniProtKB/TrEMBL
    A0A3B3CIR0
    Related
    ENSOMEP00005042989.1, ENSOMET00005048212.1
    Conserved Domains (6) summary
    cd13433
    Location:14371489
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11691445
    Ion_trans; Ion transport protein
    pfam06512
    Location:9621164
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:496659
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17521815
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    cl25549
    Location:417448
    ARGLU; Arginine and glutamate-rich 1
  6. XM_024292914.2XP_024148682.1  sodium channel, voltage gated, type VIII, alpha subunit a isoform X1

    UniProtKB/TrEMBL
    A0A3B3CIR0
    Conserved Domains (6) summary
    cd13433
    Location:14481500
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11801456
    Ion_trans; Ion transport protein
    pfam06512
    Location:9731175
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:496670
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17631826
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    cl25549
    Location:417448
    ARGLU; Arginine and glutamate-rich 1
  7. XM_024292913.2XP_024148681.1  sodium channel, voltage gated, type VIII, alpha subunit a isoform X1

    UniProtKB/TrEMBL
    A0A3B3CIR0
    Conserved Domains (6) summary
    cd13433
    Location:14481500
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11801456
    Ion_trans; Ion transport protein
    pfam06512
    Location:9731175
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:496670
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17631826
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    cl25549
    Location:417448
    ARGLU; Arginine and glutamate-rich 1
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