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pdzd7 PDZ domain containing 7 [ Sparus aurata (gilthead seabream) ]

Gene ID: 115570802, updated on 21-Dec-2023

Summary

Gene symbol
pdzd7
Gene description
PDZ domain containing 7
See related
Ensembl:ENSSAUG00010024522
Gene type
protein coding
RefSeq status
MODEL
Organism
Sparus aurata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Sparus
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Genomic context

See pdzd7 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
18
Annotation release Status Assembly Chr Location
100 current fSpaAur1.1 (GCF_900880675.1) 20 NC_044206.1 (23579998..23588265)

Chromosome 20 - NC_044206.1Genomic Context describing neighboring genes Neighboring gene sodium channel, voltage-gated, type IV, alpha, a Neighboring gene uncharacterized LOC115570808 Neighboring gene peroxiredoxin-like 2A Neighboring gene leucine zipper putative tumor suppressor 2 homolog Neighboring gene twinkle mtDNA helicase

Genomic regions, transcripts, and products

Genomic Sequence:
NC_044206.1 Chromosome 20 Reference fSpaAur1.1 Primary Assembly

General gene information

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cilium PubMed 
located_in plasma membrane PubMed 
part_of stereocilia ankle link complex PubMed 
located_in stereocilium tip PubMed 

General protein information

Preferred Names
PDZ domain-containing protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sparus aurata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSpaAur1.1 Primary Assembly

Genomic

  1. NC_044206.1 Reference fSpaAur1.1 Primary Assembly

    Range
    23579998..23588265
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030399553.1XP_030255413.1  PDZ domain-containing protein 7

    UniProtKB/TrEMBL
    A0A671YC26
    Conserved Domains (2) summary
    cd00992
    Location:187267
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl11968
    Location:488564
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
  2. XM_030399556.1XP_030255416.1  PDZ domain-containing protein 7

    UniProtKB/TrEMBL
    A0A671YC26
    Conserved Domains (2) summary
    cd00992
    Location:187267
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl11968
    Location:488564
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
  3. XM_030399550.1XP_030255410.1  PDZ domain-containing protein 7

    UniProtKB/TrEMBL
    A0A671YC26
    Conserved Domains (2) summary
    cd00992
    Location:187267
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl11968
    Location:488564
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
  4. XM_030399552.1XP_030255412.1  PDZ domain-containing protein 7

    UniProtKB/TrEMBL
    A0A671YC26
    Conserved Domains (2) summary
    cd00992
    Location:187267
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl11968
    Location:488564
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
  5. XM_030399551.1XP_030255411.1  PDZ domain-containing protein 7

    UniProtKB/TrEMBL
    A0A671YC26
    Conserved Domains (2) summary
    cd00992
    Location:187267
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl11968
    Location:488564
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
  6. XM_030399555.1XP_030255415.1  PDZ domain-containing protein 7

    UniProtKB/TrEMBL
    A0A671YC26
    Conserved Domains (2) summary
    cd00992
    Location:187267
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl11968
    Location:488564
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
  7. XM_030399554.1XP_030255414.1  PDZ domain-containing protein 7

    UniProtKB/TrEMBL
    A0A671YC26
    Related
    ENSSAUP00010060531.1, ENSSAUT00010063470.1
    Conserved Domains (2) summary
    cd00992
    Location:187267
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl11968
    Location:488564
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
  8. XM_030399559.1XP_030255419.1  PDZ domain-containing protein 7

    UniProtKB/TrEMBL
    A0A671YC26
    Conserved Domains (2) summary
    cd00992
    Location:187267
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl11968
    Location:488564
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
  9. XM_030399557.1XP_030255417.1  PDZ domain-containing protein 7

    UniProtKB/TrEMBL
    A0A671YC26
    Conserved Domains (2) summary
    cd00992
    Location:187267
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl11968
    Location:488564
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
  10. XM_030399560.1XP_030255420.1  PDZ domain-containing protein 7

    UniProtKB/TrEMBL
    A0A671YC26
    Conserved Domains (2) summary
    cd00992
    Location:187267
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl11968
    Location:488564
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
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