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Ptpn13 protein tyrosine phosphatase non-receptor type 13 [ Arvicanthis niloticus (Nile rat) ]

Gene ID: 117699737, updated on 19-Mar-2024

Summary

Gene symbol
Ptpn13
Gene description
protein tyrosine phosphatase non-receptor type 13
See related
EnsemblRapid:ENSANLG00005020664
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicanthis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
Orthologs
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Genomic context

See Ptpn13 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
48
Annotation release Status Assembly Chr Location
100 current mArvNil1.pat.X (GCF_011762505.1) Unplaced Scaffold NW_023044997.1 (19919830..20087052, complement)

NW_023044997.1Genomic Context describing neighboring genes Neighboring gene chromosome unknown C4orf36 homolog Neighboring gene solute carrier family 10 member 6 Neighboring gene triosephosphate isomerase-like Neighboring gene 60S ribosomal protein L35a-like

Genomic regions, transcripts, and products

Genomic Sequence:
NW_023044997 Unplaced Scaffold Reference mArvNil1.pat.X

General gene information

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm PubMed 
located_in cytoskeleton PubMed 
located_in nucleus PubMed 

General protein information

Preferred Names
LOW QUALITY PROTEIN: tyrosine-protein phosphatase non-receptor type 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvNil1.pat.X

Genomic

  1. NW_023044997.1 Reference mArvNil1.pat.X

    Range
    19919830..20087052 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034491598.1XP_034347489.1  LOW QUALITY PROTEIN: tyrosine-protein phosphatase non-receptor type 13

    Related
    ENSANLP00005025678.1, ENSANLT00005029178.1
    Conserved Domains (8) summary
    smart00228
    Location:14871577
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    smart00295
    Location:565773
    B41; Band 4.1 homologues
    smart00750
    Location:3190
    KIND; kinase non-catalytic C-lobe domain
    cd00992
    Location:10811165
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd17195
    Location:563658
    FERM_F1_PTPN13; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in tyrosine-protein phosphatase non-receptor type 13 (PTPN13)
    cd14597
    Location:22052438
    PTPc-N13; catalytic domain of tyrosine-protein phosphatase non-receptor type 13
    pfam16599
    Location:11671355
    PTN13_u3; Unstructured linker region on PTN13 protein between PDZ
    cl17171
    Location:769869
    PH-like; Pleckstrin homology-like domain
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