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LOC120251586 hydroxyproline O-galactosyltransferase HPGT1 [ Dioscorea cayenensis subsp. rotundata (Guinea yam) ]

Gene ID: 120251586, updated on 7-Dec-2023

Summary

Gene symbol
LOC120251586
Gene description
hydroxyproline O-galactosyltransferase HPGT1
Gene type
protein coding
RefSeq status
MODEL
Organism
Dioscorea cayenensis subsp. rotundata (sub-species: rotundata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Dioscoreales; Dioscoreaceae; Dioscorea
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Genomic context

See LOC120251586 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
12
Annotation release Status Assembly Chr Location
100 current TDr96_F1_v2_PseudoChromosome.rev07_lg8_w22 25.fasta (GCF_009730915.1) 20 NC_052490.1 (31887550..31891806, complement)

Chromosome 20 - NC_052490.1Genomic Context describing neighboring genes Neighboring gene putative glucose-6-phosphate 1-epimerase Neighboring gene uncharacterized LOC120251587 Neighboring gene ubiquitin-conjugating enzyme E2-17 kDa Neighboring gene mitochondrial carrier protein MTM1-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_052490.1 Chromosome 20 Reference TDr96_F1_v2_PseudoChromosome.rev07_lg8_w22 25.fasta Primary Assembly

General gene information

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi membrane PubMed 

General protein information

Preferred Names
hydroxyproline O-galactosyltransferase HPGT1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dioscorea cayenensis subsp. rotundata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TDr96_F1_v2_PseudoChromosome.rev07_lg8_w22 25.fasta Primary Assembly

Genomic

  1. NC_052490.1 Reference TDr96_F1_v2_PseudoChromosome.rev07_lg8_w22 25.fasta Primary Assembly

    Range
    31887550..31891806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039260162.1XP_039116096.1  hydroxyproline O-galactosyltransferase HPGT1 isoform X2

    Conserved Domains (1) summary
    PLN03193
    Location:103344
    PLN03193; beta-1,3-galactosyltransferase; Provisional
  2. XM_039260161.1XP_039116095.1  hydroxyproline O-galactosyltransferase HPGT1 isoform X1

    Conserved Domains (1) summary
    PLN03193
    Location:105346
    PLN03193; beta-1,3-galactosyltransferase; Provisional
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