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ITGB5 integrin subunit beta 5 [ Bos taurus (domestic cattle) ]

Gene ID: 282564, updated on 4-Oct-2024

Summary

Official Symbol
ITGB5provided by VGNC
Official Full Name
integrin subunit beta 5provided by VGNC
Primary source
VGNC:VGNC:30330
See related
Ensembl:ENSBTAG00000013755
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See ITGB5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (69196890..69312489, complement)

Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene kalirin RhoGEF kinase Neighboring gene uncharacterized LOC132345643 Neighboring gene uncharacterized LOC101905265 Neighboring gene uridine monophosphate synthetase Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene mucin 13, cell surface associated

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

Expression

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

Pathways from PubChem

General gene information

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cell surface PubMed 
located_in focal adhesion PubMed 
part_of integrin complex PubMed 

General protein information

Preferred Names
integrin beta-5
Names
integrin, beta 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_174679.2NP_777104.1  integrin beta-5 precursor

    See identical proteins and their annotated locations for NP_777104.1

    Status: PROVISIONAL

    Source sequence(s)
    AF468059
    UniProtKB/Swiss-Prot
    A3KMX2, P80747
    UniProtKB/TrEMBL
    F1MK32, Q8SQB9
    Related
    ENSBTAP00000018278.6, ENSBTAT00000018278.7
    Conserved Domains (3) summary
    smart00187
    Location:35463
    INB; Integrin beta subunits (N-terminal portion of extracellular region)
    pfam07965
    Location:635719
    Integrin_B_tail; Integrin beta tail domain
    pfam08725
    Location:746789
    Integrin_b_cyt; Integrin beta cytoplasmic domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    69196890..69312489 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024993427.2XP_024849195.1  integrin beta-5 isoform X1

    UniProtKB/Swiss-Prot
    A3KMX2, P80747
    UniProtKB/TrEMBL
    A0A3Q1MEY0
    Related
    ENSBTAP00000069065.1, ENSBTAT00000080405.2
    Conserved Domains (2) summary
    smart00187
    Location:35463
    INB; Integrin beta subunits (N-terminal portion of extracellular region)
    pfam07965
    Location:635714
    Integrin_B_tail; Integrin beta tail domain
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