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F3 coagulation factor III, tissue factor [ Sus scrofa (pig) ]

Gene ID: 396677, updated on 17-Aug-2024

Summary

Official Symbol
F3provided by VGNC
Official Full Name
coagulation factor III, tissue factorprovided by VGNC
Primary source
VGNC:VGNC:87864
See related
Ensembl:ENSSSCG00000022447
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in subcutaneous adipose (RPKM 68.9), lung (RPKM 37.4) and 6 other tissues See more
Orthologs
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Genomic context

Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (122827018..122837673)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (134474466..134479707)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene calponin 3 Neighboring gene solute carrier family 44 member 3 Neighboring gene uncharacterized LOC106508578 Neighboring gene ATP binding cassette subfamily D member 3 Neighboring gene uncharacterized LOC102161678 Neighboring gene uncharacterized LOC106510223

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane PubMed 

General protein information

Preferred Names
tissue factor
Names
coagulation factor III (thromboplastin, tissue factor)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213785.1NP_998950.1  tissue factor

    See identical proteins and their annotated locations for NP_998950.1

    Status: PROVISIONAL

    Source sequence(s)
    AY504424
    UniProtKB/TrEMBL
    A0A4X1TT00, I3LE68, Q6RCS8
    Related
    ENSSSCP00000022354.2, ENSSSCT00000027504.4
    Conserved Domains (2) summary
    pfam01108
    Location:34114
    Tissue_fac; Tissue factor
    pfam09294
    Location:135242
    Interfer-bind; Interferon-alpha/beta receptor, fibronectin type III

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    122827018..122837673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021088682.1XP_020944341.1  tissue factor isoform X1

    Conserved Domains (2) summary
    pfam01108
    Location:34114
    Tissue_fac; Tissue factor
    cl21522
    Location:135194
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
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