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COL22A1 collagen type XXII alpha 1 chain [ Pan troglodytes (chimpanzee) ]

Gene ID: 464415, updated on 17-Aug-2024

Summary

Official Symbol
COL22A1provided by VGNC
Official Full Name
collagen type XXII alpha 1 chainprovided by VGNC
Primary source
VGNC:VGNC:50312
Locus tag
CK820_G0029151
See related
Ensembl:ENSPTRG00000020613
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

See COL22A1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
64
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 7 NC_072405.2 (148842618..149169072, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 8 NC_072406.1 (153443811..153770301, complement)

Chromosome 7 - NC_072405.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107976454 Neighboring gene family with sequence similarity 135 member B Neighboring gene uncharacterized LOC107976455 Neighboring gene uncharacterized LOC107976527 Neighboring gene uncharacterized LOC134810926 Neighboring gene potassium two pore domain channel subfamily K member 9

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in collagen-containing extracellular matrix PubMed 
located_in extracellular space PubMed 

General protein information

Preferred Names
collagen alpha-1(XXII) chain
Names
collagen, type XXII, alpha 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072405.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    148842618..149169072 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003311931.6XP_003311979.3  collagen alpha-1(XXII) chain isoform X1

  2. XM_063817403.1XP_063673473.1  collagen alpha-1(XXII) chain isoform X2

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