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    LOC4329593 serine decarboxylase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329593, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC4329593
    Gene description
    serine decarboxylase 1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SDC1; OsJ_07054; P0472F10.2; OJ1298_H07.24
    Expression
    Ubiquitous expression in flowers (RPKM 121.5), flower buds (RPKM 118.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (20109002..20112443)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene protein IDA-LIKE 2-like Neighboring gene U-box domain-containing protein 27 Neighboring gene RING-H2 finger protein ATL72 Neighboring gene uncharacterized LOC112937910

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carboxy-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carboxylic acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine decarboxylase 1
    Names
    LOC_Os02g33710
    Os02g0541300
    putative serine decarboxylase
    XP_015626683.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416655.1 → NP_001403584.1  serine decarboxylase 1

      Status: PROVISIONAL

      Source sequence(s)
      AP014958, AU031600, CI185685, CI238690, EE591047
      UniProtKB/Swiss-Prot
      Q0E0L0, Q6ESZ9

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      20109002..20112443
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771197.2 → XP_015626683.1  serine decarboxylase 1

      UniProtKB/Swiss-Prot
      Q6ESZ9
      Conserved Domains (1) summary
      PLN02263
      Location:27 → 481
      PLN02263; serine decarboxylase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ESZ9.1 GenPept UniProtKB/Swiss-Prot:Q6ESZ9

    Gene LinkOut

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