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    LOC4330198 ceramide kinase-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330198, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC4330198
    Gene description
    ceramide kinase-like
    Locus tag
    OSNPB_020656200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CERK; OsCERK; OJ1003_B06.39
    Expression
    Ubiquitous expression in mature seeds (RPKM 17.3), roots after flowering (RPKM 15.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (26504099..26515223, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene putative kinase-like protein TMKL1 Neighboring gene cuticle collagen 2 Neighboring gene anaphase-promoting complex subunit 8 Neighboring gene chaperone protein dnaJ A6-like Neighboring gene ethylene-responsive transcription factor TINY

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A conserved cysteine motif is critical for rice ceramide kinase activity and function. Bi FC, et al. PLoS One, 2011 Mar 31. PMID 21483860, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ceramide kinase
    Names
    LOC_Os02g43906/LOC_Os02g43912
    P0519E06.23
    putative ceramide kinase
    XP_015627472.1
    XP_015627473.1
    XP_015627475.1
    XP_015627476.1
    XP_025878540.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416799.1 → NP_001403728.1  ceramide kinase

      Status: VALIDATED

      Source sequence(s)
      FJ765452
      UniProtKB/Swiss-Prot
      C0LT23, Q0DZ01, Q6H6H1

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      26504099..26515223 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022755.1 → XP_025878540.1  ceramide kinase isoform X3

      UniProtKB/TrEMBL
      B8AG39
      Conserved Domains (1) summary
      PLN02204
      Location:2 → 564
      PLN02204; diacylglycerol kinase

    2. XM_015771986.2 → XP_015627472.1  ceramide kinase isoform X1

      UniProtKB/TrEMBL
      B8AG39, B9F1G4
      Conserved Domains (1) summary
      PLN02204
      Location:8 → 627
      PLN02204; diacylglycerol kinase

    3. XM_015771987.2 → XP_015627473.1  ceramide kinase isoform X2

      UniProtKB/Swiss-Prot
      C0LT23
      Conserved Domains (1) summary
      cl01255
      Location:8 → 607
      DAGK_cat; Diacylglycerol kinase catalytic domain

    4. XM_015771989.2 → XP_015627475.1  ceramide kinase isoform X4

      UniProtKB/TrEMBL
      B8AG39
      Conserved Domains (1) summary
      PLN02204
      Location:1 → 522
      PLN02204; diacylglycerol kinase

    5. XM_015771990.2 → XP_015627476.1  ceramide kinase isoform X5

      UniProtKB/TrEMBL
      A0A0P0VML6
      Conserved Domains (1) summary
      PLN02204
      Location:8 → 426
      PLN02204; diacylglycerol kinase

    RNA

    1. XR_003240475.1 RNA Sequence

    2. XR_003240476.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    C0LT23.1 GenPept UniProtKB/Swiss-Prot:C0LT23

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