GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 451 - 475 of 557 in total
Pathway Name Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID ▲
Regulation of IGF Activity by IGFBP
  • ADAM10
  • AFP
  • AHSG
  • ALB
  • AMBN
  • AMELX
  • AMTN
  • ANO8
  • APOA1
  • APOA2
  • APOA5
  • APOB
  • APOE
  • APOL3
  • APP
  • BMP15
  • BMP4
  • BPIFB2
  • C3
  • C4A
  • CALU
  • CCN1
  • CDH2
  • CHGB
  • CHGC
  • CHRDL1
  • CKAP4
  • CP
  • CSF1
  • CSPG2
  • CST3
  • DMP1
  • DNAJC3
  • ENAM
  • F5
  • FAM20A
  • FAM20C
  • FBN1
  • FETUA
  • FGA
  • FGF23
  • FN1
  • FSTL1
  • FUCA2
  • GAS6
  • GOLM1
  • GPC3
  • GRP94
  • HRC
  • HSP90B1
  • HSPC4
  • IGF1
  • IGF2
  • IGFBP1
  • IGFBP2
  • IGFBP3
  • IGFBP4
  • IGFBP5
  • IGFBP7
  • IL6
  • ITIH2
  • KNG1
  • KTN1
  • LGALS1
  • LOC107131209
  • LOC112442231
  • LOC112446726
  • LOC510193
  • LOC515697
  • LOC518495
  • LOC521214
  • LOC524576
  • LOC531557
  • LOC786352
  • LOC788334
  • LTBP1
  • MADM
  • MATN3
  • MBTPS1
  • MEGF6
  • MELTF
  • MEN1
  • MEPE
  • MFGE8
  • MGAT4A
  • MIA3
  • MXRA8
  • NUCB1
  • P4HB
  • PAPPA2
  • PDIA6
  • PENK
  • PI
  • PNPLA2
  • PRKCSH
  • PROC
  • PRSS23
  • RCN1
  • SCG2
  • SCG3
  • SCOTIN
  • SDC2
  • SERPINA1
  • SERPINA10
  • SERPIND1
  • SHISA5
  • SPARCL1
  • SPP1
  • SPP2
  • SPP24
  • STC2
  • TF
  • TMEM132A
  • TNC
  • TRA1
  • VCAN
  • VGF
  • VWA1
  • WFS1
Bos taurus (cattle)
Retrograde transport at the Trans-Golgi-Network
  • ARFIP2
  • ARFRP1
  • ARL1
  • COG1
  • COG2
  • COG3
  • COG4
  • COG5
  • COG6
  • COG7
  • COG8
  • GCC1
  • GCC2
  • GOLGA1
  • GOLGA4
  • IGF2R
  • M6PR
  • M6PRBP1
  • NAPA
  • NAPB
  • NAPG
  • NSF
  • PLIN3
  • RAB6A
  • RAB6B
  • RAB9A
  • RAB9B
  • RABEPK
  • RGP1
  • RHOBTB3
  • RIC1
  • SCOC
  • SNAPB
  • STX10
  • STX16
  • STX6
  • SYS1
  • TMF1
  • VAMP4
  • VPS51
  • VPS52
  • VPS53
  • VPS54
  • VTI1A
Bos taurus (cattle)
Ovarian tumor domain proteases
  • APC
  • ARHA
  • CARD15
  • CDC2
  • CDK1
  • CDKN1
  • ESR
  • ESR1
  • IKBKG
  • NEMO
  • NOD2
  • NR3A1
  • OTUB1
  • OTUB2
  • OTUD3
  • OTUD7A
  • OTUD7B
  • PTEN
  • RHO12
  • RHOA
  • RIPK1
  • RIPK2
  • RNF128
  • RPS27A
  • TNIP1
  • TNIP2
  • TNIP3
  • TP53
  • TRAF3
  • TRAF6
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
  • UBE2D1
  • VCP
  • VCPIP1
  • YOD1
  • ZRANB1
Bos taurus (cattle)
Phase 4 - resting membrane potential
  • IRK1
  • KCNJ12
  • KCNJ14
  • KCNJ2
  • KCNJ4
  • KCNK1
  • KCNK10
  • KCNK12
  • KCNK13
  • KCNK15
  • KCNK16
  • KCNK17
  • KCNK18
  • KCNK2
  • KCNK3
  • KCNK4
  • KCNK5
  • KCNK7
  • KCNK9
Bos taurus (cattle)
TFAP2 (AP-2) family regulates transcription of growth factors and their receptors
  • ATAD2
  • CGA
  • ESR
  • ESR1
  • LHB
  • NR3A1
Bos taurus (cattle)
Reversible hydration of carbon dioxide
  • CA1
  • CA12
  • CA13
  • CA14
  • CA2
  • CA3
  • CA4
  • CA5A
  • CA5B
  • CA6
  • CA9
Bos taurus (cattle)
Organic anion transporters
  • GC1
  • SLC17A1
  • SLC17A5
  • SLC17A6
  • SLC17A7
  • SLC17A8
  • SLC20A4
  • SLC25A1
  • SLC25A10
  • SLC25A11
  • SLC25A22
  • SLC5A5
  • SLC5A8
  • SMCT1
  • VGLUT1
  • VGLUT2
Bos taurus (cattle)
Prostanoid ligand receptors
  • PTGDR
  • PTGDR2
  • PTGER1
  • PTGER2
  • PTGER3
  • PTGER4
  • PTGFR
  • PTGIR
  • TBXA2R
Bos taurus (cattle)
Synthesis of 12-eicosatetraenoic acid derivatives
  • ALOX12
  • ALOX12B
  • ALOX15
  • ALOXE3
  • GPX1
  • GPX4
Bos taurus (cattle)
VEGF ligand-receptor interactions
  • FIGF
  • PGF
  • PLGF
  • VEGF
  • VEGFA
  • VEGFB
  • VEGFC
  • VEGFD
  • VRF
Bos taurus (cattle)
Laminin interactions
  • ITGA3
  • ITGA6
  • ITGA7
  • ITGB1
  • ITGB4
  • LAMA4
  • MEGF6
  • NID1
Bos taurus (cattle)
Other interleukin signaling
  • CSF1
  • CSF1R
  • CSF3
  • CSF3R
  • GCSF
  • IFNLR1
  • IL10RB
  • IL34
  • JAK1
  • PRTN3
  • PTPRZ1
  • SDC1
  • SNAP25
  • STX1A
  • STX3
  • STX4
  • STXBP2
  • SYB2
  • TXLNA
  • TYK2
  • VAMP2
Bos taurus (cattle)
RHO GTPases activate IQGAPs
  • CALM
  • CDC42
  • CDH1
  • CLIP1
  • CTNNA1
  • CTNNB1
  • IQGAP1
  • IQGAP2
  • IQGAP3
  • MEN1
Bos taurus (cattle)
Arachidonate production from DAG
  • ABHD12
  • ABHD6
  • DAGLA
  • DAGLB
Bos taurus (cattle)
Ketone body catabolism
  • ACAT1
  • BDH
  • BDH1
  • OXCT1
Bos taurus (cattle)
Platelet Aggregation (Plug Formation)
  • F2
  • GP1BB
  • GP5
  • GP9
  • VWF
Bos taurus (cattle)
CD22 mediated BCR regulation
  • CD22
  • CD79A
  • CD79B
  • IGA
  • LYN
  • MB-1
  • PTPN6
Bos taurus (cattle)
Formation of the cornified envelope
  • CASP14
  • CDSN
  • CELA2A
  • DSC1
  • DSC2
  • DSC3
  • DSG1
  • DSG2
  • DSG3
  • DSG4
  • DSP
  • EVPL
  • JUP
  • KLK12
  • KLK13
  • KLK14
  • KLK5
  • KLK8
  • KLNC
  • LIPJ
  • LIPK
  • LIPM
  • LIPN
  • PI3
  • PKP1
  • PKP4
  • PPL
  • RPTN
  • SPINK5
  • SPINK6
  • SPINK9
  • TCHH
  • TGM1
Bos taurus (cattle)
Switching of origins to a post-replicative state
  • CDT1
  • GMNN
  • MCM2
  • MCM3
  • MCM4
  • MCM5
  • MCM6
  • MCM7
Bos taurus (cattle)
Caspase-mediated cleavage of cytoskeletal proteins
  • ADD1
  • CASP3
  • CASP6
  • CASP7
  • CASP8
  • GAS2
  • GSN
  • PLEC
  • SORBS2
  • SPTAN1
  • VIM
Bos taurus (cattle)
Activation of NF-kappaB in B cells
  • BCL10
  • CARD11
  • CHUK
  • CUL1
  • FBXW11
  • IKBKB
  • IKBKG
  • IKKA
  • MALT1
  • NEMO
  • NFKB1
  • NFKBIA
  • NFKBIB
  • NFKBIE
  • PRKCB
  • PRKCB1
  • PSMA1
  • PSMA2
  • PSMA3
  • PSMA4
  • PSMA5
  • PSMA6
  • PSMA7
  • PSMA8
  • PSMB1
  • PSMB10
  • PSMB2
  • PSMB3
  • PSMB4
  • PSMB5
  • PSMB6
  • PSMB7
  • PSMB8
  • PSMB9
  • PSMC2
  • PSMC3
  • PSMC4
  • PSMC5
  • PSMC6
  • PSMD1
  • PSMD11
  • PSMD12
  • PSMD13
  • PSMD14
  • PSMD2
  • PSMD3
  • PSMD4
  • PSMD5
  • PSMD6
  • PSMD7
  • PSMD8
  • PSMD9
  • PSME1
  • PSME2
  • PSME4
  • PSMF1
  • REL
  • RELA
  • RPS27A
  • SKP1
  • SKP1A
  • SUG1
  • TRAP2
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
  • bIkBa
Bos taurus (cattle)
Zinc influx into cells by the SLC39 gene family
  • SLC39A1
  • SLC39A14
  • SLC39A2
  • SLC39A4
  • SLC39A6
  • SLC39A7
  • SLC39A8
  • ZIP1
  • ZIP4
Bos taurus (cattle)
Downregulation of TGF-beta receptor signaling
  • BAMBI
  • MTMR4
  • RPS27A
  • SMAD2
  • SMAD3
  • SMAD7
  • SMURF2
  • STRAP
  • STUB1
  • TGFB1
  • TGFBR1
  • TGFBR2
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
Bos taurus (cattle)
Dopamine Neurotransmitter Release Cycle
  • CASK
  • CPLX1
  • LIN7A
  • LIN7B
  • LIN7C
  • PPFIA1
  • PPFIA2
  • PPFIA3
  • PPFIA4
  • RAB3A
  • RIMS1
  • SLC18A2
  • SNAP25
  • STX1A
  • STXBP1
  • SYB2
  • SYN1
  • SYT1
  • UNC13B
  • UNC18A
  • VAMP2
Bos taurus (cattle)
Acyl chain remodelling of PE
  • ABHD4
  • CPLA2
  • HRASLS5
  • LOC613966
  • LPCAT3
  • LPCAT4
  • MBOAT1
  • MBOAT2
  • PLA2G12A
  • PLA2G16
  • PLA2G1B
  • PLA2G2A
  • PLA2G2D1
  • PLA2G2E
  • PLA2G3
  • PLA2G4
  • PLA2G4A
  • PLA2G4D
  • PLA2G4E
  • PLA2G4F
  • PLA2G6
  • PLA2R1
  • PLAAT1
  • PLAAT5
  • PLBD1
  • PNPLA8
Bos taurus (cattle)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024