GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 51 - 75 of 557 in total
Pathway Name Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID ▲
Stabilization of p53
  • ATM
  • CHEK2
  • MDM2
  • TP53
Bos taurus (cattle)
Adrenaline signalling through Alpha-2 adrenergic receptor
  • ADRA2A
  • ADRA2B
  • ADRA2C
Bos taurus (cattle)
Metabolism of steroid hormones
  • STS
Bos taurus (cattle)
Maturation of TCA enzymes and regulation of TCA cycle
  • ACAT1
  • ACN9
  • ACO2
  • CS
  • CSKMT
  • CYB560
  • FRDA
  • FXN
  • HBLD1
  • HBLD2
  • IDH2
  • ISCA1
  • ISCA2
  • ISCU
  • ISD11
  • LYRM4
  • LYRM8
  • NFS1
  • PGL2
  • SDH5
  • SDHA
  • SDHAF1
  • SDHAF2
  • SDHAF3
  • SDHB
  • SDHC
  • SDHD
  • SIRT3
Bos taurus (cattle)
Miscellaneous transport and binding events
  • ADD1
  • ADD2
  • ADD3
  • ANKH
  • AZGP1
  • CTNS
  • DMT
  • DMTN
  • EPB49
  • LLRC8A
  • LOC104972276
  • LRRC8A
  • LRRC8B
  • LRRC8C
  • LRRC8D
  • LRRC8E
  • MAGT1
  • MRS2
  • NIPA1
  • NIPA2
  • NIPAL1
  • NIPAL2
  • NIPAL3
  • NIPAL4
  • PIP
  • SLC66A1
  • TUSC3
Bos taurus (cattle)
Receptor Mediated Mitophagy
  • ATG12
  • ATG5
  • CK2A1
  • CK2N
  • CSNK2A1
  • CSNK2A2
  • CSNK2B
  • FUNDC1
  • MAP1ALC3
  • MAP1LC3
  • MAP1LC3A
  • MAP1LC3B
  • PGAM5
  • SRC
  • ULK1
Bos taurus (cattle)
PI-3K cascade:FGFR2
  • AFGF
  • FGF1
  • FGF10
  • FGF16
  • FGF17
  • FGF18
  • FGF2
  • FGF20
  • FGF23
  • FGF3
  • FGF4
  • FGF4A
  • FGF4C
  • FGF5
  • FGF5B
  • FGF5C
  • FGF6
  • FGF6A
  • FGF7
  • FGF7B
  • FGF8
  • FGF9
  • FGFA
  • FGFR2
  • FRS2
  • Fgf4
  • GAB1
  • GRB2
  • HBGF-1
  • PIK3CA
  • PIK3R1
  • PTPN11
Bos taurus (cattle)
Ion channel transport
  • ATP6A1
  • ATP6AP1
  • ATP6B1
  • ATP6B2
  • ATP6C
  • ATP6D
  • ATP6E
  • ATP6G
  • ATP6G1
  • ATP6H
  • ATP6IP1
  • ATP6N1B
  • ATP6S1
  • ATP6S14
  • ATP6V0A1
  • ATP6V0A2
  • ATP6V0A4
  • ATP6V0B
  • ATP6V0C
  • ATP6V0D1
  • ATP6V0D2
  • ATP6V0E
  • ATP6V0E1
  • ATP6V0E2
  • ATP6V1A
  • ATP6V1A1
  • ATP6V1B1
  • ATP6V1B2
  • ATP6V1C1
  • ATP6V1C2
  • ATP6V1E1
  • ATP6V1E2
  • ATP6V1F
  • ATP6V1G1
  • ATP6V1G2
  • ATP6V1G3
  • ATP6V1H
  • LOC101904667
  • TCIRG1
  • VATC
  • VATF
  • VPATPD
Bos taurus (cattle)
Insulin receptor recycling
  • ATP6A1
  • ATP6AP1
  • ATP6B1
  • ATP6B2
  • ATP6C
  • ATP6D
  • ATP6E
  • ATP6G
  • ATP6G1
  • ATP6H
  • ATP6IP1
  • ATP6N1B
  • ATP6S1
  • ATP6S14
  • ATP6V0A1
  • ATP6V0A2
  • ATP6V0A4
  • ATP6V0B
  • ATP6V0C
  • ATP6V0D1
  • ATP6V0D2
  • ATP6V0E
  • ATP6V0E1
  • ATP6V0E2
  • ATP6V1A
  • ATP6V1A1
  • ATP6V1B1
  • ATP6V1B2
  • ATP6V1C1
  • ATP6V1C2
  • ATP6V1E1
  • ATP6V1E2
  • ATP6V1F
  • ATP6V1G1
  • ATP6V1G2
  • ATP6V1G3
  • ATP6V1H
  • CTSD
  • IDE
  • INS
  • INSR
  • LOC101904667
  • PTPN1
  • PTPRF
  • TCIRG1
  • VATC
  • VATF
  • VPATPD
Bos taurus (cattle)
Ion transport by P-type ATPases
  • ATP10A
  • ATP10B
  • ATP10D
  • ATP11A
  • ATP11B
  • ATP11C
  • ATP12A
  • ATP13A1
  • ATP13A2
  • ATP13A4
  • ATP13A5
  • ATP1A1
  • ATP1A2
  • ATP1A3
  • ATP1A4
  • ATP1B1
  • ATP1B2
  • ATP1B3
  • ATP2A1
  • ATP2A2
  • ATP2A3
  • ATP2B1
  • ATP2B2
  • ATP2B3
  • ATP2B4
  • ATP2C1
  • ATP2C2
  • ATP4A
  • ATP4B
  • ATP8A1
  • ATP8A2
  • ATP8B1
  • ATP8B2
  • ATP8B3
  • ATP8B4
  • ATP9A
  • ATP9B
  • CALM
  • CAMK2A
  • CAMK2B
  • CAMK2D
  • FXYD1
  • FXYD2
  • FXYD4
  • FXYD6
  • FXYD7
  • PLM
  • PLN
  • SPCA
  • SRI
Bos taurus (cattle)
GABA B receptor activation
  • GABBR1
  • GABBR2
Bos taurus (cattle)
Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits
  • GABBR1
  • GABBR2
  • GIRK1
  • GIRK4
  • GNB1
  • GNB2
  • GNB3
  • GNB4
  • GNB5
  • GNG10
  • GNG11
  • GNG12
  • GNG13
  • GNG2
  • GNG3
  • GNG4
  • GNG5
  • GNG7
  • GNG8
  • GNGT1
  • GNGT12
  • GNGT2
  • GNGT3
  • GNGT5
  • GNGT7
  • GNGT8
  • IRK1
  • KCNJ10
  • KCNJ12
  • KCNJ15
  • KCNJ16
  • KCNJ2
  • KCNJ3
  • KCNJ4
  • KCNJ5
  • KCNJ6
Bos taurus (cattle)
GLI3 is processed to GLI3R by the proteasome
  • CSNK1A1
  • CUL1
  • GLI3
  • GSK3B
  • PRKACA
  • PRKACB
  • PSMA1
  • PSMA2
  • PSMA3
  • PSMA4
  • PSMA5
  • PSMA6
  • PSMA7
  • PSMA8
  • PSMB1
  • PSMB10
  • PSMB2
  • PSMB3
  • PSMB4
  • PSMB5
  • PSMB6
  • PSMB7
  • PSMB8
  • PSMB9
  • PSMC2
  • PSMC3
  • PSMC4
  • PSMC5
  • PSMC6
  • PSMD1
  • PSMD11
  • PSMD12
  • PSMD13
  • PSMD14
  • PSMD2
  • PSMD3
  • PSMD4
  • PSMD5
  • PSMD6
  • PSMD7
  • PSMD8
  • PSMD9
  • PSME1
  • PSME2
  • PSME4
  • PSMF1
  • RPS27A
  • SKP1
  • SKP1A
  • SUFU
  • SUG1
  • TRAP2
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
Bos taurus (cattle)
Molecules associated with elastic fibres
  • BMP10
  • BMP2
  • BMP4
  • BMP7
  • EFEMP2
  • FBLN5
  • GDF5
  • ITGAV
  • ITGB1
  • ITGB3
  • ITGB5
  • ITGB6
  • ITGB8
  • LTBP1
  • LTBP2
  • LTBP3
  • LTBP4
  • MFAP3
  • MFAP4
  • MFAP5
  • TGFB1
  • TGFB2
  • TGFB3
  • VTN
Bos taurus (cattle)
The canonical retinoid cycle in rods (twilight vision)
  • ABCA4
  • ABCR
  • CRALBP
  • CYP4V2
  • DHRS9
  • HSD17B6
  • LOC101906939
  • LRAT
  • MYO7A
  • RBP1
  • RBP3
  • RBP4
  • RDH1
  • RDH10
  • RDH11
  • RDH12
  • RDH16
  • RDH5
  • RDHS
  • RHO
  • RLBP1
  • SDR9C7
  • SDRO
  • STRA6
  • TTR
Bos taurus (cattle)
The retinoid cycle in cones (daylight vision)
  • BCP
  • CRALBP
  • DHRS3
  • OPN1LW
  • OPN1SW
  • RBP3
  • RCP
  • RLBP1
Bos taurus (cattle)
Amino acid transport across the plasma membrane
  • ASCT2
  • B0AT2
  • LAT4
  • NTT73
  • ORNT3
  • SATT
  • SLC16A10
  • SLC1A4
  • SLC1A5
  • SLC25A29
  • SLC36A1
  • SLC36A2
  • SLC36A4
  • SLC38A1
  • SLC38A2
  • SLC38A3
  • SLC38A4
  • SLC38A5
  • SLC3A1
  • SLC3A2
  • SLC43A1
  • SLC43A2
  • SLC6A15
  • SLC6A18
  • SLC6A19
  • SLC6A20
  • SLC6A6
  • SLC7A1
  • SLC7A10
  • SLC7A11
  • SLC7A3
  • SLC7A5
  • SLC7A6
  • SLC7A7
  • SLC7A8
  • SLC7A9
  • SNAT2
  • SNAT5
Bos taurus (cattle)
FGFR1c and Klotho ligand binding and activation
  • FGF23
  • FGFR1
  • KL
Bos taurus (cattle)
Signaling by BMP
  • ACTRII
  • ACVR2
  • ACVR2A
  • ACVR2B
  • ACVRL1
  • AMH
  • AMHR2
  • BMP10
  • BMP2
  • BMPR1A
  • BMPR1B
  • BMPR2
  • CER1
  • CHRDL1
  • FSTL1
  • GDF2
  • INHA
  • INHBA
  • NOG
  • SF3A2
  • SKI
  • SMAD1
  • SMAD4
  • SMAD5
  • SMAD6
  • SMAD7
  • SMAD9
  • SMURF1
  • SMURF2
  • TGFBR3
  • UBE2D1
  • UBE2D3
  • ZFYVE16
Bos taurus (cattle)
PI-3K cascade:FGFR1
  • AFGF
  • FGF1
  • FGF10
  • FGF17
  • FGF2
  • FGF20
  • FGF23
  • FGF3
  • FGF4
  • FGF4A
  • FGF5
  • FGF5C
  • FGF6
  • FGF7B
  • FGF8
  • FGF9
  • FGFA
  • FGFR1
  • FRS2
  • Fgf4
  • GAB1
  • GRB2
  • HBGF-1
  • KL
  • PIK3CA
  • PIK3R1
  • PTPN11
Bos taurus (cattle)
Cell surface interactions at the vascular wall
  • AMICA1
  • APOB
  • CAR
  • CD177
  • CD18
  • CD2
  • CD44
  • CD47
  • CD48
  • CD58
  • CD74
  • CD84
  • CEACAM1
  • CXADR
  • EPCAM
  • EPCR
  • ESAM
  • F11R
  • F2
  • FCAMR
  • FCER1G
  • FN1
  • FYN
  • GAS6
  • GLG1
  • GPC1
  • IGJ
  • ITGA4
  • ITGAL
  • ITGAM
  • ITGAX
  • ITGB1
  • ITGB2
  • JAM1
  • JAM2
  • JAML
  • JCHAIN
  • LOC100336941
  • LYN
  • MERTK
  • MIF
  • OLR1
  • PECAM1
  • PPBP
  • PROC
  • PROCR
  • PROS
  • PROS1
  • SDC1
  • SDC2
  • SDC4
  • SELE
  • SELP
  • SIRPA
  • SIRPB1
  • SPN
  • TGFB1
  • THBD
  • TREM1
Bos taurus (cattle)
Vitamin C (ascorbate) metabolism
  • CYB5
  • CYB5A
  • CYB5R3
  • DIA1
  • GLUT1
  • GSTO2
  • SLC23A1
  • SLC23A2
  • SLC2A1
  • SLC2A3
Bos taurus (cattle)
PKA activation
  • ADCY1
  • ADCY2
  • ADCY3
  • ADCY4
  • ADCY5
  • ADCY6
  • ADCY8
  • ADCY9
  • CALM
  • PRKACA
  • PRKACB
  • PRKAR1A
  • PRKAR1B
  • PRKAR2A
Bos taurus (cattle)
Degradation of GLI1 by the proteasome
  • CUL1
  • GLI1
  • ITCH
  • NUMB
  • PSMA1
  • PSMA2
  • PSMA3
  • PSMA4
  • PSMA5
  • PSMA6
  • PSMA7
  • PSMA8
  • PSMB1
  • PSMB10
  • PSMB2
  • PSMB3
  • PSMB4
  • PSMB5
  • PSMB6
  • PSMB7
  • PSMB8
  • PSMB9
  • PSMC2
  • PSMC3
  • PSMC4
  • PSMC5
  • PSMC6
  • PSMD1
  • PSMD11
  • PSMD12
  • PSMD13
  • PSMD14
  • PSMD2
  • PSMD3
  • PSMD4
  • PSMD5
  • PSMD6
  • PSMD7
  • PSMD8
  • PSMD9
  • PSME1
  • PSME2
  • PSME4
  • PSMF1
  • RPS27A
  • SKP1
  • SKP1A
  • SUFU
  • SUG1
  • TRAP2
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
Bos taurus (cattle)
Regulation of RUNX2 expression and activity
  • CUL1
  • PSMA1
  • PSMA2
  • PSMA3
  • PSMA4
  • PSMA5
  • PSMA6
  • PSMA7
  • PSMB1
  • PSMB10
  • PSMB2
  • PSMB3
  • PSMB4
  • PSMB5
  • PSMB6
  • PSMB7
  • PSMB8
  • PSMB9
  • PSMC2
  • PSMC3
  • PSMC4
  • PSMC5
  • PSMC6
  • PSMD1
  • PSMD11
  • PSMD12
  • PSMD13
  • PSMD14
  • PSMD2
  • PSMD3
  • PSMD4
  • PSMD5
  • PSMD6
  • PSMD7
  • PSMD8
  • PSMD9
  • PSME1
  • PSME2
  • PSMF1
  • RPS27A
  • RUNX2
  • SKP1
  • SKP1A
  • SKP2
  • STUB1
  • SUG1
  • TRAP2
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
Bos taurus (cattle)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024