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Genes / Proteins / Lipids Glycans / Glycoconjugates Glycomes Pathways / Interactions / Diseases / Organisms
collagen type IV alpha 6 chain
Summary
- Gene Symbol
-
- COL4A6
- Organism
- Homo sapiens (human)
Annotation
- Keyword
-
- Alternative splicing
- Basement membrane
- Cell adhesion
- Chromosomal rearrangement
- Collagen
- Disease variant
- Disulfide bond
- Glycoprotein
- Hydroxylation
- Non-syndromic deafness
- Proteomics identification
- Reference proteome
- Repeat
- Signal
- Proteins
Gene Ontology (GO)
| GO Term | Evidence Code | PMID |
|---|---|---|
| collagen-activated tyrosine kinase receptor signaling pathway | ||
| cellular response to amino acid stimulus | ||
| cell adhesion | ||
| extracellular matrix organization |
GO Hierarchy
| GO Term | Evidence Code | PMID |
|---|---|---|
| collagen-containing extracellular matrix | ||
| endoplasmic reticulum lumen | ||
| basement membrane | ||
| extracellular region | ||
| collagen type IV trimer |
GO Hierarchy
| GO Term | Evidence Code | PMID |
|---|---|---|
| protein binding | ||
| extracellular matrix structural constituent conferring tensile strength |
OrthoDB (Group)
- Group level
- Eukaryota
- Group Name
- collagen
- Functional Category
-
- E: Amino acid transport and metabolism
- G: Carbohydrate transport and metabolism
- T: Signal transduction mechanisms
| Gene Ontology |
|---|
| extracellular matrix organization |
| extracellular matrix structural constituent conferring tensile strength |
| extracellular matrix structural constituent |
| InterPro |
|---|
| C-type lectin fold |
| Collagen IV, non-collagenous domain superfamily |
| Collagen IV, non-collagenous |
| Collagen triple helix repeat |
Disease
- Disease Ontology
| DO ID | Disease Name | Source |
|---|---|---|
| DOID:0111740 | X-linked deafness 6 | |
| DOID:423 | myopathy | |
| DOID:854 | collagen disease |
Ortholog
| Species | Gene ID | OrthoDB | Alliance of Genome Resources | Orthologous MAtrix |
|---|---|---|---|---|
| 33727 | FB:FBgn0000299 | |||
| 94216 | MGI:2152695 | MOUSE65902 | ||
| 176314 | WB:WBGene00001263 | |||
| 181708 | WB:WBGene00002280 | |||
| 363458 | RGD:1589724 | RATNO44996 | ||
| 403840 | CANLF20046 | |||
| 465804 | 9598_0:0056c0 | PANTR46568 | ||
| 523526 | BOVIN36719 | |||
| 554268 | ZFIN:ZDB-GENE-101001-2 | |||
| 703707 | MACMU48272 |
