Submissions
GlyTouCan
Glycan Structure Repository
GlyComb
Glycoconjugate Repository
GlycoPOST
Glycomics MS raw data Repository
UniCarb-DR
Glycomics MS Repository for glycan annotations from GlycoWorkbench
LM-GlycoRepo
Repository for lectin-assisted multimodality data
All Resources
Genes / Proteins / Lipids Glycans / Glycoconjugates Glycomes Pathways / Interactions / Diseases / OrganismsTools
SugarDrawer
GlycanBuilder
Glycan Converters
GlycoMaple
GlycomeAtlas
LM-GlycomeAtlas
GALAXY
MCAW
GlycoSim
GRable
Guidelines
MIRAGE
collagen type I alpha 1 chain
Summary
- Gene Symbol
-
- Col1a1
- Organism
- Rattus norvegicus (Norway rat)
Annotation
- Keyword
-
- 3D-structure
- Calcium
- Collagen
- Direct protein sequencing
- Disulfide bond
- Extracellular matrix
- Glycoprotein
- Hydroxylation
- Metal-binding
- Phosphoprotein
- Pyrrolidone carboxylic acid
- Reference proteome
- Repeat
- Signal
- Proteins
| UniProt | Protein Name |
|---|---|
| P02454 |
|
Gene Ontology (GO)
| GO Term | Evidence Code | PMID |
|---|---|---|
| bone trabecula formation | ||
| response to organic cyclic compound | ||
| intramembranous ossification | ||
| cellular response to transforming growth factor beta stimulus | ||
| cellular response to vitamin E |
GO Hierarchy
biological process
cellular process [inference]
response to stimulus [inference]
response to endogenous stimulus [inference]
response to chemical [inference]
cellular response to stimulus [inference]
biological regulation [inference]
regulation of biological process [inference]
regulation of metabolic process [inference]
positive regulation of biological process [inference]
regulation of cellular process [inference]
| GO Term | Evidence Code | PMID |
|---|---|---|
| collagen trimer | ||
| extracellular matrix | ||
| cytoplasm | ||
| extracellular space | ||
| extracellular region |
GO Hierarchy
| GO Term | Evidence Code | PMID |
|---|---|---|
| platelet-derived growth factor binding | ||
| metal ion binding | ||
| extracellular matrix structural constituent conferring tensile strength | ||
| extracellular matrix structural constituent | ||
| protein binding |
GO Hierarchy
OrthoDB (Group)
- Group level
- Rodentia
- Group Name
- collagen alpha-1(I) chain
- Functional Category
-
- O: Posttranslational modification, protein turnover, chaperones
- P: Inorganic ion transport and metabolism
- Q: Secondary metabolites biosynthesis, transport and catabolism
| InterPro |
|---|
| Collagen triple helix repeat |
| Fibrillar collagen, C-terminal |
| VWFC domain |
Alliance of Genome Resources
- Expression
| Location | References |
|---|---|
Disease
- Disease Ontology
| DO ID | Disease Name | Source |
|---|---|---|
| DOID:0050827 | rheumatic heart disease | |
| DOID:0080162 | lupus nephritis | |
| DOID:0080208 | metabolic dysfunction-associated steatotic liver disease | |
| DOID:0080547 | metabolic dysfunction-associated steatohepatitis | |
| DOID:0080727 | Ehlers-Danlos syndrome arthrochalasia type 1 | |
| DOID:0110334 | osteogenesis imperfecta type 1 | |
| DOID:0110339 | osteogenesis imperfecta type 3 | |
| DOID:0110340 | osteogenesis imperfecta type 4 | |
| DOID:0110341 | osteogenesis imperfecta type 2 | |
| DOID:11476 | osteoporosis |
Ortholog
| Species | Gene ID | OrthoDB | Alliance of Genome Resources | Orthologous MAtrix |
|---|---|---|---|---|
| 1277 | HGNC:2197 | HUMAN34868 | ||
| 12842 | 10090_1:0036b3 | MGI:88467 | MOUSE07210 | |
| 282187 | BOVIN13067 | |||
| 325675 | ZFIN:ZDB-GENE-030131-4400 | |||
| 337158 | ZFIN:ZDB-GENE-030131-9102 | DANRE31666 | ||
| 403651 | CANLF18887 | |||
| 443483 | SHEEP02923 | |||
| 496414 | Xenbase:XB-GENE-6258379 | |||
| 574201 | MACMU14488 | |||
| 100019354 | MONDO10750 |
