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pseudouridine-5'-phosphate glycosidase

Summary

Gene Symbol

PDEN_RS08945

Organism

Paracoccus denitrificans PD1222

External Links

NCBI Gene: 75501300
PubChem: 75501300

Annotation

Keyword

Glycosidase
Lyase
Manganese
Metal-binding
Reference proteome

Proteins

Displaying 1 entry
UniProt	Protein Name
A1B316

Annotation information from UniProt.

Gene Ontology (GO)

Displaying 1 entry
GO Term	Evidence Code	PMID
nucleobase catabolic process

GO Hierarchy

biological process

metabolic process [inference]

nitrogen compound metabolic process [inference]

cellular nitrogen compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing small molecule metabolic process [inference]

nucleobase metabolic process [inference]

nucleobase catabolic process

organonitrogen compound metabolic process [inference]

nucleobase metabolic process [inference]

nucleobase catabolic process

organonitrogen compound catabolic process [inference]

nucleobase catabolic process

catabolic process [inference]

cellular catabolic process [inference]

heterocycle catabolic process [inference]

nucleobase catabolic process

organic substance catabolic process [inference]

organic cyclic compound catabolic process [inference]

nucleobase catabolic process

organonitrogen compound catabolic process [inference]

nucleobase catabolic process

cellular metabolic process [inference]

cellular aromatic compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing small molecule metabolic process [inference]

nucleobase metabolic process [inference]

nucleobase catabolic process

cellular nitrogen compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing small molecule metabolic process [inference]

nucleobase metabolic process [inference]

nucleobase catabolic process

cellular catabolic process [inference]

heterocycle catabolic process [inference]

nucleobase catabolic process

heterocycle metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing small molecule metabolic process [inference]

nucleobase metabolic process [inference]

nucleobase catabolic process

heterocycle catabolic process [inference]

nucleobase catabolic process

primary metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing small molecule metabolic process [inference]

nucleobase metabolic process [inference]

nucleobase catabolic process

small molecule metabolic process [inference]

nucleobase-containing small molecule metabolic process [inference]

nucleobase metabolic process [inference]

nucleobase catabolic process

organic substance metabolic process [inference]

organic cyclic compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing small molecule metabolic process [inference]

nucleobase metabolic process [inference]

nucleobase catabolic process

organic cyclic compound catabolic process [inference]

nucleobase catabolic process

organonitrogen compound metabolic process [inference]

nucleobase metabolic process [inference]

nucleobase catabolic process

organonitrogen compound catabolic process [inference]

nucleobase catabolic process

organic substance catabolic process [inference]

organic cyclic compound catabolic process [inference]

nucleobase catabolic process

organonitrogen compound catabolic process [inference]

nucleobase catabolic process

cellular process [inference]

cellular metabolic process [inference]

cellular aromatic compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing small molecule metabolic process [inference]

nucleobase metabolic process [inference]

nucleobase catabolic process

cellular nitrogen compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing small molecule metabolic process [inference]

nucleobase metabolic process [inference]

nucleobase catabolic process

cellular catabolic process [inference]

heterocycle catabolic process [inference]

nucleobase catabolic process

heterocycle metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing small molecule metabolic process [inference]

nucleobase metabolic process [inference]

nucleobase catabolic process

heterocycle catabolic process [inference]

nucleobase catabolic process

Displaying **all 3** entries
GO Term	Evidence Code	PMID
hydrolase activity, acting on glycosyl bonds
pseudouridylate synthase activity
metal ion binding

GO Hierarchy

molecular function

catalytic activity [inference]

hydrolase activity [inference]

hydrolase activity, acting on glycosyl bonds

lyase activity [inference]

carbon-oxygen lyase activity [inference]

hydro-lyase activity [inference]

pseudouridylate synthase activity

binding [inference]

ion binding [inference]

cation binding [inference]

metal ion binding

Gene Ontology information from NCBI Gene and UniProt.

Rhea

RHEA:18337

uracil + D-ribose 5-phosphate

H₂O + ψ-UMP

Enzyme

4.2.1.70

PMID

International Collaboration

GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01

GlyCosmos Portal v4.0.0

Last updated: August 19, 2024

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Acknowledgements