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Genes / Proteins / Lipids Glycans / Glycoconjugates Glycomes Pathways / Interactions / Diseases / Organisms
collagen type XVIII alpha 1 chain
Summary
- Gene Symbol
-
- COL18A1
- Organism
- Homo sapiens (human)
Annotation
- Keyword
-
- 3D-structure
- Alternative promoter usage
- Alternative splicing
- Basement membrane
- Cell adhesion
- Collagen
- Disulfide bond
- Glaucoma
- Hydroxylation
- Metal-binding
- Phosphoprotein
- Proteoglycan
- Reference proteome
- Repeat
- Signal
- Zinc
- Proteins
| UniProt | Protein Name |
|---|---|
| P39060 |
|
Gene Ontology (GO)
| GO Term | Evidence Code | PMID |
|---|---|---|
| notochord development | ||
| response to xenobiotic stimulus | ||
| response to hydrostatic pressure | ||
| collagen fibril organization | ||
| endothelial cell morphogenesis |
| GO Term | Evidence Code | PMID |
|---|---|---|
| collagen-containing extracellular matrix | ||
| endoplasmic reticulum lumen | ||
| basement membrane | ||
| extracellular region | ||
| collagen trimer |
GO Hierarchy
| GO Term | Evidence Code | PMID |
|---|---|---|
| protein binding | ||
| metal ion binding | ||
| identical protein binding | ||
| extracellular matrix structural constituent conferring tensile strength |
GO Hierarchy
OrthoDB (Group)
- Group level
- Eukaryota
- Group Name
- collagen alpha
- Functional Category
-
- E: Amino acid transport and metabolism
- P: Inorganic ion transport and metabolism
- T: Signal transduction mechanisms
| InterPro |
|---|
| Collagen triple helix repeat |
Disease
- Disease Ontology
| DO ID | Disease Name | Source |
|---|---|---|
| DOID:0050700 | cardiomyopathy | |
| DOID:0060680 | pigment dispersion syndrome | |
| DOID:10808 | gastric ulcer | |
| DOID:12930 | dilated cardiomyopathy | |
| DOID:1405 | primary angle-closure glaucoma | |
| DOID:423 | myopathy | |
| DOID:684 | hepatocellular carcinoma | |
| DOID:699 | mitochondrial myopathy | |
| DOID:8577 | ulcerative colitis |
Ortholog
| Species | Gene ID | OrthoDB | Alliance of Genome Resources | Orthologous MAtrix |
|---|---|---|---|---|
| 12822 | MGI:88451 | MOUSE02403 | ||
| 38769 | FB:FBgn0260660 | |||
| 85251 | RGD:70936 | RATNO21834 | ||
| 172678 | WB:WBGene00000527 | |||
| 394393 | Xenbase:XB-GENE-941374 | |||
| 394845 | Xenbase:XB-GENE-941368 | |||
| 398292 | Xenbase:XB-GENE-17337214 | |||
| 474050 | 9598_0:00524b | PANTR25848 | ||
| 508076 | BOVIN15517 | |||
| 564123 | ZFIN:ZDB-GENE-030516-3 | DANRE44728 |
