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HhH-GPD base excision DNA repair family protein

Summary

Gene Symbol

Organism

Arabidopsis thaliana (thale cress)

External Links

NCBI Gene: 830335
PubChem: 830335

Annotation

Keyword

4Fe-4S
Activator
Alternative splicing
DNA-binding
Hydrolase
Nucleus
Reference proteome
Transcription regulation

Proteins

Displaying 1 entry
UniProt	Protein Name
Q8LK56	DNA glycosylase-related protein DME

Annotation information from UniProt.

Gene Ontology (GO)

Displaying **all 5** entries
GO Term	Evidence Code	PMID
epigenetic regulation of gene expression	IDA	16624880
epigenetic programming in the endosperm	IMP	16469697
base-excision repair	IEA
DNA demethylation	IEA
embryo development ending in seed dormancy	IMP	12150995

GO Hierarchy

biological process

metabolic process [inference]

nitrogen compound metabolic process [inference]

cellular nitrogen compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleic acid metabolic process [inference]

DNA metabolic process [inference]

DNA repair [inference]

base-excision repair

DNA modification [inference]

DNA dealkylation [inference]

DNA demethylation

cellular metabolic process [inference]

cellular aromatic compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleic acid metabolic process [inference]

DNA metabolic process [inference]

DNA repair [inference]

base-excision repair

DNA modification [inference]

DNA dealkylation [inference]

DNA demethylation

cellular nitrogen compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleic acid metabolic process [inference]

DNA metabolic process [inference]

DNA repair [inference]

base-excision repair

DNA modification [inference]

DNA dealkylation [inference]

DNA demethylation

heterocycle metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleic acid metabolic process [inference]

DNA metabolic process [inference]

DNA repair [inference]

base-excision repair

DNA modification [inference]

DNA dealkylation [inference]

DNA demethylation

primary metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleic acid metabolic process [inference]

DNA metabolic process [inference]

DNA repair [inference]

base-excision repair

DNA modification [inference]

DNA dealkylation [inference]

DNA demethylation

demethylation [inference]

DNA demethylation

organic substance metabolic process [inference]

macromolecule metabolic process [inference]

macromolecule modification [inference]

DNA modification [inference]

DNA dealkylation [inference]

DNA demethylation

nucleic acid metabolic process [inference]

DNA metabolic process [inference]

DNA repair [inference]

base-excision repair

DNA modification [inference]

DNA dealkylation [inference]

DNA demethylation

organic cyclic compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleic acid metabolic process [inference]

DNA metabolic process [inference]

DNA repair [inference]

base-excision repair

DNA modification [inference]

DNA dealkylation [inference]

DNA demethylation

cellular process [inference]

cellular metabolic process [inference]

cellular aromatic compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleic acid metabolic process [inference]

DNA metabolic process [inference]

DNA repair [inference]

base-excision repair

DNA modification [inference]

DNA dealkylation [inference]

DNA demethylation

cellular nitrogen compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleic acid metabolic process [inference]

DNA metabolic process [inference]

DNA repair [inference]

base-excision repair

DNA modification [inference]

DNA dealkylation [inference]

DNA demethylation

heterocycle metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleic acid metabolic process [inference]

DNA metabolic process [inference]

DNA repair [inference]

base-excision repair

DNA modification [inference]

DNA dealkylation [inference]

DNA demethylation

cellular response to stimulus [inference]

cellular response to stress [inference]

DNA damage response [inference]

DNA repair [inference]

base-excision repair

cellular component organization or biogenesis [inference]

cellular component organization [inference]

protein-containing complex organization [inference]

protein-DNA complex organization [inference]

chromatin organization [inference]

chromatin remodeling [inference]

epigenetic regulation of gene expression

post-fertilization epigenetic regulation of gene expression [inference]

epigenetic programming in the zygotic pronuclei [inference]

epigenetic programming in the endosperm

reproductive process [inference]

developmental process involved in reproduction [inference]

embryo development ending in seed dormancy

multicellular organismal process [inference]

multicellular organism development [inference]

embryo development [inference]

embryo development ending in seed dormancy

developmental process [inference]

developmental process involved in reproduction [inference]

embryo development ending in seed dormancy

anatomical structure development [inference]

multicellular organism development [inference]

embryo development [inference]

embryo development ending in seed dormancy

response to stimulus [inference]

response to stress [inference]

cellular response to stress [inference]

DNA damage response [inference]

DNA repair [inference]

base-excision repair

cellular response to stimulus [inference]

cellular response to stress [inference]

DNA damage response [inference]

DNA repair [inference]

base-excision repair

biological regulation [inference]

regulation of biological process [inference]

regulation of metabolic process [inference]

regulation of biosynthetic process [inference]

regulation of cellular biosynthetic process [inference]

regulation of macromolecule biosynthetic process [inference]

regulation of gene expression [inference]

epigenetic regulation of gene expression

post-fertilization epigenetic regulation of gene expression [inference]

epigenetic programming in the zygotic pronuclei [inference]

epigenetic programming in the endosperm

regulation of cellular metabolic process [inference]

regulation of cellular biosynthetic process [inference]

regulation of macromolecule biosynthetic process [inference]

regulation of gene expression [inference]

epigenetic regulation of gene expression

post-fertilization epigenetic regulation of gene expression [inference]

epigenetic programming in the zygotic pronuclei [inference]

epigenetic programming in the endosperm

regulation of macromolecule metabolic process [inference]

regulation of macromolecule biosynthetic process [inference]

regulation of gene expression [inference]

epigenetic regulation of gene expression

post-fertilization epigenetic regulation of gene expression [inference]

epigenetic programming in the zygotic pronuclei [inference]

epigenetic programming in the endosperm

regulation of cellular process [inference]

regulation of cellular metabolic process [inference]

regulation of cellular biosynthetic process [inference]

regulation of macromolecule biosynthetic process [inference]

regulation of gene expression [inference]

epigenetic regulation of gene expression

post-fertilization epigenetic regulation of gene expression [inference]

epigenetic programming in the zygotic pronuclei [inference]

epigenetic programming in the endosperm

Displaying **all 2** entries
GO Term	Evidence Code	PMID
nucleus	ISM ISS	12150995
polar nucleus	IDA	12150995

GO Hierarchy

cellular component

cellular anatomical entity [inference]

organelle [inference]

membrane-bounded organelle [inference]

intracellular membrane-bounded organelle [inference]

nucleus

megasporocyte nucleus [inference]

polar nucleus

intracellular organelle [inference]

intracellular membrane-bounded organelle [inference]

nucleus

megasporocyte nucleus [inference]

polar nucleus

Displaying entries **1 - 5** of 7 in total

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GO Term	Evidence Code	PMID
DNA binding
DNA N-glycosylase activity	IDA ISS	12150995 16624880 24678721
4 iron, 4 sulfur cluster binding
SUMO binding	IPI	24255109
DNA-(apurinic or apyrimidinic site) endonuclease activity	IDA	16624880