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Guidelines

MIRAGE

H2B clustered histone 9

Summary

Gene Symbol

H2BC9

Organism

Homo sapiens (human)

External Links

NCBI Gene

8345

PubChem

8345

Alliance of Genome Resources

HGNC:4755

Annotation

Keyword

3D-structure
ADP-ribosylation
Acetylation
Direct protein sequencing
Glycoprotein
Hydroxylation
Isopeptide bond
Methylation
Nucleosome core
Nucleus
Phosphoprotein
Reference proteome
Ubl conjugation

Proteins

Displaying 1 entry
UniProt	Protein Name
Q93079	H2B-clustered histone 9 Histone H2B.j

Annotation information from UniProt.

Gene Ontology (GO)

Displaying 1 entry
GO Term	Evidence Code	PMID
nucleosome assembly	NAS	9119399

GO Hierarchy

biological process

cellular process [inference]

cellular component organization or biogenesis [inference]

cellular component organization [inference]

cellular component assembly [inference]

protein-containing complex assembly [inference]

protein-DNA complex assembly [inference]

nucleosome assembly

protein-containing complex organization [inference]

protein-containing complex assembly [inference]

protein-DNA complex assembly [inference]

nucleosome assembly

protein-DNA complex organization [inference]

chromatin organization [inference]

chromatin remodeling [inference]

nucleosome organization [inference]

nucleosome assembly

protein-DNA complex assembly [inference]

nucleosome assembly

Displaying entries **1 - 5** of 8 in total

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GO Term	Evidence Code	PMID
nucleosome	NAS	9119399
nucleus	IDA	16319397
nucleus	HDA	21630459
nucleoplasm	TAS
nucleoplasm	IDA

GO Hierarchy

cellular component

protein-containing complex

protein-DNA complex [inference]

nucleosome

cellular anatomical entity [inference]

organelle [inference]

membrane-bounded organelle [inference]

vesicle [inference]

extracellular vesicle [inference]

extracellular exosome

intracellular membrane-bounded organelle [inference]

nucleus

extracellular membrane-bounded organelle [inference]

extracellular vesicle [inference]

extracellular exosome

intracellular organelle [inference]

intracellular membrane-bounded organelle [inference]

nucleus

extracellular organelle [inference]

extracellular membrane-bounded organelle [inference]

extracellular vesicle [inference]

extracellular exosome

Displaying entries **1 - 5** of 7 in total

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GO Term	Evidence Code	PMID
DNA binding	NAS	9119399
protein binding	IPI	26479788 32296183 32814053
enzyme binding	IPI	26479788
structural constituent of chromatin	IEA
ubiquitin-like protein ligase binding	IPI	26479788

GO Hierarchy

molecular function

structural molecule activity [inference]

structural constituent of chromatin

binding [inference]

protein binding

transcription factor binding [inference]

DNA-binding transcription factor binding [inference]

RNA polymerase II-specific DNA-binding transcription factor binding [inference]

STAT family protein binding

ubiquitin-like protein ligase binding

protein dimerization activity [inference]

protein heterodimerization activity

organic cyclic compound binding [inference]

nucleic acid binding [inference]

DNA binding

Gene Ontology information from NCBI Gene and UniProt.

OrthoDB (Group)

Group level

Eukaryota

Group Name

Histone H2B

Functional Category

J: Translation, ribosomal structure and biogenesis

Displaying **all 6** entries
Gene Ontology
antimicrobial humoral immune response mediated by antimicrobial peptide
defense response to Gram-positive bacterium
innate immune response in mucosa
nucleosome assembly
protein heterodimerization activity
structural constituent of chromatin

Displaying **all 3** entries
InterPro
Histone H2A/H2B/H3
Histone H2B
Histone-fold

Ortholog

Displaying entries **1 - 10** of **784** in total

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Species	Gene ID	Alliance of Genome Resources	Orthologous MAtrix
Xenopus tropicalis	1082	Xenbase:XB-GENE-5722947
Xenopus tropicalis	2488	Xenbase:XB-GENE-5722947
Xenopus tropicalis	3017	Xenbase:XB-GENE-5722947
Xenopus tropicalis	3018	Xenbase:XB-GENE-5722947
Xenopus tropicalis	3972	Xenbase:XB-GENE-5722947
Xenopus tropicalis	8339	Xenbase:XB-GENE-6452473
Xenopus tropicalis	8340	Xenbase:XB-GENE-5722947
Xenopus tropicalis	8341	Xenbase:XB-GENE-5722947
Xenopus tropicalis	8342	Xenbase:XB-GENE-5722947
Xenopus tropicalis	8343	Xenbase:XB-GENE-6452473

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Supported by JST NBDC Grant Number JPMJND2204

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GlyCosmos Portal v4.3.0

Last updated: August 4, 2025