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dTDP-4-dehydrorhamnose 3,5-epimerase

Summary

Gene Symbol

rmlC

Organism

Pseudomonas aeruginosa PAO1

External Links

NCBI Gene: 879991
PubChem: 879991

Annotation

Keyword

3D-structure
Carbohydrate metabolism
Isomerase
Lipopolysaccharide biosynthesis
Reference proteome

Proteins

Displaying 1 entry
UniProt	Protein Name
Q9HU21	Thymidine diphospho-4-keto-rhamnose 3,5-epimerase dTDP-4-keto-6-deoxyglucose 3,5-epimerase dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase dTDP-L-rhamnose synthase

Annotation information from UniProt.

Gene Ontology (GO)

Displaying **all 5** entries
GO Term	Evidence Code	PMID
dTDP-rhamnose biosynthetic process	IDA ISS	10455186 17046787
lipopolysaccharide core region biosynthetic process	IDA	11065359
lipopolysaccharide biosynthetic process
extracellular polysaccharide biosynthetic process
O antigen biosynthetic process	ISS	9023210

GO Hierarchy

biological process

metabolic process [inference]

nitrogen compound metabolic process [inference]

cellular nitrogen compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

dTDP-rhamnose metabolic process [inference]

dTDP-rhamnose biosynthetic process

cellular nitrogen compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

biosynthetic process [inference]

cellular biosynthetic process [inference]

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

heterocycle biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

aromatic compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

cellular nitrogen compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

organic substance biosynthetic process [inference]

lipid biosynthetic process [inference]

lipopolysaccharide biosynthetic process

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

carbohydrate biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

oligosaccharide biosynthetic process [inference]

lipopolysaccharide core region biosynthetic process

carbohydrate derivative biosynthetic process [inference]

lipopolysaccharide biosynthetic process

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

organic cyclic compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

cellular metabolic process [inference]

cellular aromatic compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

dTDP-rhamnose metabolic process [inference]

dTDP-rhamnose biosynthetic process

aromatic compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

cellular nitrogen compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

dTDP-rhamnose metabolic process [inference]

dTDP-rhamnose biosynthetic process

cellular nitrogen compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

cellular biosynthetic process [inference]

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

heterocycle biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

aromatic compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

cellular nitrogen compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

heterocycle metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

dTDP-rhamnose metabolic process [inference]

dTDP-rhamnose biosynthetic process

heterocycle biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

primary metabolic process [inference]

carbohydrate metabolic process [inference]

polysaccharide metabolic process [inference]

polysaccharide biosynthetic process [inference]

extracellular polysaccharide metabolic process [inference]

extracellular polysaccharide biosynthetic process

O antigen metabolic process [inference]

O antigen biosynthetic process

oligosaccharide metabolic process [inference]

oligosaccharide biosynthetic process [inference]

lipopolysaccharide core region biosynthetic process

lipopolysaccharide core region metabolic process [inference]

lipopolysaccharide core region biosynthetic process

carbohydrate biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

oligosaccharide biosynthetic process [inference]

lipopolysaccharide core region biosynthetic process

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

dTDP-rhamnose metabolic process [inference]

dTDP-rhamnose biosynthetic process

lipid metabolic process [inference]

lipid biosynthetic process [inference]

lipopolysaccharide biosynthetic process

liposaccharide metabolic process [inference]

lipopolysaccharide metabolic process [inference]

lipopolysaccharide biosynthetic process

small molecule metabolic process [inference]

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

dTDP-rhamnose metabolic process [inference]

dTDP-rhamnose biosynthetic process

organic substance metabolic process [inference]

carbohydrate metabolic process [inference]

polysaccharide metabolic process [inference]

polysaccharide biosynthetic process [inference]

extracellular polysaccharide metabolic process [inference]

extracellular polysaccharide biosynthetic process

O antigen metabolic process [inference]

O antigen biosynthetic process

oligosaccharide metabolic process [inference]

oligosaccharide biosynthetic process [inference]

lipopolysaccharide core region biosynthetic process

lipopolysaccharide core region metabolic process [inference]

lipopolysaccharide core region biosynthetic process

carbohydrate biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

oligosaccharide biosynthetic process [inference]

lipopolysaccharide core region biosynthetic process

lipid metabolic process [inference]

lipid biosynthetic process [inference]

lipopolysaccharide biosynthetic process

liposaccharide metabolic process [inference]

lipopolysaccharide metabolic process [inference]

lipopolysaccharide biosynthetic process

macromolecule metabolic process [inference]

polysaccharide metabolic process [inference]

polysaccharide biosynthetic process [inference]

extracellular polysaccharide metabolic process [inference]

extracellular polysaccharide biosynthetic process

O antigen metabolic process [inference]

O antigen biosynthetic process

lipopolysaccharide metabolic process [inference]

lipopolysaccharide biosynthetic process

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

carbohydrate derivative metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

dTDP-rhamnose metabolic process [inference]

dTDP-rhamnose biosynthetic process

carbohydrate derivative biosynthetic process [inference]

lipopolysaccharide biosynthetic process

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

liposaccharide metabolic process [inference]

lipopolysaccharide metabolic process [inference]

lipopolysaccharide biosynthetic process

organic cyclic compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

dTDP-rhamnose metabolic process [inference]

dTDP-rhamnose biosynthetic process

organic cyclic compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

organic substance biosynthetic process [inference]

lipid biosynthetic process [inference]

lipopolysaccharide biosynthetic process

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

carbohydrate biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

oligosaccharide biosynthetic process [inference]

lipopolysaccharide core region biosynthetic process

carbohydrate derivative biosynthetic process [inference]

lipopolysaccharide biosynthetic process

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

organic cyclic compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

cellular process [inference]

cellular metabolic process [inference]

cellular aromatic compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

dTDP-rhamnose metabolic process [inference]

dTDP-rhamnose biosynthetic process

aromatic compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

cellular nitrogen compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

dTDP-rhamnose metabolic process [inference]

dTDP-rhamnose biosynthetic process

cellular nitrogen compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

cellular biosynthetic process [inference]

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

heterocycle biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

aromatic compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

cellular nitrogen compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

heterocycle metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

dTDP-rhamnose metabolic process [inference]

dTDP-rhamnose biosynthetic process

heterocycle biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

dTDP-rhamnose biosynthetic process

Displaying 1 entry
GO Term	Evidence Code	PMID
cytosol

GO Hierarchy

cellular component

cellular anatomical entity [inference]

cytosol

Displaying 1 entry
GO Term	Evidence Code	PMID
dTDP-4-dehydrorhamnose 3,5-epimerase activity	EXP ISS	10455186 17046787

GO Hierarchy

molecular function

catalytic activity [inference]

isomerase activity [inference]

racemase and epimerase activity [inference]

racemase and epimerase activity, acting on carbohydrates and derivatives [inference]

dTDP-4-dehydrorhamnose 3,5-epimerase activity

Gene Ontology information from NCBI Gene and UniProt.

Rhea

dTDP-4-dehydro-6-deoxy-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

Enzyme

5.1.3.13

PMID

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Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01

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Last updated: August 19, 2024