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GlycoNAVI Proteins
GlycoNAVI-Proteins is dataset of glycan and protein information. This is the content of GlycoNAVI.
| Source | Last Updated |
|---|---|
| GlycoNAVI Proteins | September 04, 2024 |
| PDB ID | UniProt ID ▲ | Title | Descriptor |
|---|---|---|---|
| 7WLY | P0DTC2 | Cryo-EM structure of the Omicron S in complex with 35B5 Fab(1 down- and 2 up RBDs) | |
| 7WLZ | P0DTC2 | Cryo-EM structure of the Omicron S in complex with 35B5 Fab(1 down-, 1 up- and 1 invisible RBDs) | |
| 7Q0A | P0DTC2 | SARS-CoV-2 Spike ectodomain with Fab FI3A | |
| 7Q0A | P0DTC2 | SARS-CoV-2 Spike ectodomain with Fab FI3A | |
| 7TL1 | P0DTC2 | SARS-CoV-2 Omicron 3-RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron) | |
| 7TL9 | P0DTC2 | SARS-CoV-2 Omicron 1-RBD up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron) | |
| 7TP4 | P0DTC2 | Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody K398.22 | |
| 7WPD | P0DTC2 | SARS-CoV-2 Omicron Variant S Trimer complexed with one JMB2002 Fab | |
| 7WPF | P0DTC2 | SARS-CoV-2 Omicron Variant S Trimer complexed with three JMB2002 Fab | |
| 7WUE | P0DTC2 | Crystal structure of SARS-CoV-2 Receptor Binding Domain in complex with the monoclonal antibody m31A7 | |
| 7C8V | P0DTC2 | Structure of sybody SR4 in complex with the SARS-CoV-2 S Receptor Binding domain (RBD) | |
| 7C8W | P0DTC2 | Structure of sybody MR17 in complex with the SARS-CoV-2 S receptor-binding domain (RBD) | |
| 7CAC | P0DTC2 | SARS-CoV-2 S trimer with one RBD in the open state and complexed with one H014 Fab. | Spike glycoprotein, Light chain of H014 Fab, Heavy chain of H014 Fab |
| 7CHB | P0DTC2 | Crystal structure of the SARS-CoV-2 RBD in complex with BD-236 Fab | |
| 7CHP | P0DTC2 | Crystal structure of SARS-CoV-2 antibody P5A-3C8 with RBD | |
| 7CWU | P0DTC2 | SARS-CoV-2 spike proteins trimer in complex with P17 and FC05 Fabs cocktail | Spike glycoprotein, heavy chain of P17 Fab, light chain of P17 Fab, heavy chain of FC05 Fab, light chain of FC05 Fab |
| 7CZR | P0DTC2 | S protein of SARS-CoV-2 in complex bound with P5A-1B8_2B | Spike glycoprotein, heavy chain of 4A8, light chain of 4A8 |
| 7CZW | P0DTC2 | S protein of SARS-CoV-2 in complex bound with P5A-2G7 | Spike glycoprotein, heavy chain of 4A8, light chain of 4A8 |
| 7D2Z | P0DTC2 | Structure of sybody SR31 in complex with the SARS-CoV-2 S Receptor Binding domain (RBD) | |
| 7DX5 | P0DTC2 | S protein of SARS-CoV-2 bound with PD of ACE2 in the conformation 2 (1 up RBD and 1 PD bound) | Sodium-dependent neutral amino acid transporter B(0)AT1, Angiotensin-converting enzyme 2 (E.C.3.4.17.23) |
| 7E23 | P0DTC2 | SARS-CoV-2 spike in complex with the CA521 neutralizing antibody Fab (focused refinement on Fab-RBD) | Spike protein S1, CA521 Heavy Chain, CA521 Light Chain |
| 7E39 | P0DTC2 | SARS-CoV-2 spike in complex with the Ab4 neutralizing antibody (State 3) | |
| 7EAM | P0DTC2 | immune complex of SARS-CoV-2 RBD and cross-neutralizing antibody 7D6 | |
| 7EAN | P0DTC2 | immune complex of SARS-CoV-2 RBD and cross-neutralizing antibody 6D6 | |
| 7EJ5 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 spike in complex with a neutralizing antibody RBD-chAb-45 | Spike glycoprotein, RBD-chAb45, Heavy chain, RBD-chAb45, Light chain |
| 7EY4 | P0DTC2 | Local CryoEM of the SARS-CoV-2 S6PV2 in complex with BD-667 | |
| 7FDI | P0DTC2 | SARS-COV-2 Spike RBDMACSp36 binding to hACE2 | |
| 7KE7 | P0DTC2 | SARS-CoV-2 D614G 3-RBD-down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-D614G Sub-Classification) | Spike glycoprotein |
| 7KJ4 | P0DTC2 | SARS-CoV-2 Spike Glycoprotein with three ACE2 Bound | Spike glycoprotein |
| 7LCN | P0DTC2 | Structure of SARS-CoV-2 S protein in complex with N-terminal domain antibody DH1050.1 | |
| 7M6D | P0DTC2 | Structure of the SARS-CoV-2 RBD in complex with neutralizing antibodies BG4-25 and CR3022 | |
| 7M71 | P0DTC2 | SARS-CoV-2 Spike:5A6 Fab complex I focused refinement | Spike glycoprotein, Fab 5A6 heavy chain, Fab 5A6 light chain |
| 7MJI | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain bound to VH ab8 (focused refinement of RBD and VH ab8) | Spike glycoprotein, VH ab8 |
| 7MJJ | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain bound to Fab ab1 (class 1) | Spike glycoprotein, Fab ab1 Heavy Chain, Fab ab1 Light Chain |
| 7MJL | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain bound to Fab ab1 (focused refinement of RBD and Fab ab1) | Spike glycoprotein, Fab ab1 Heavy Chain, Fab ab1 Light Chain |
| 7MKM | P0DTC2 | SARS-CoV-2 Spike RBD in complex with neutralizing Fab SARS2-38 (local refinement) | |
| 7MTC | P0DTC2 | Structure of freshly purified SARS-CoV-2 S2P spike at pH 7.4 | |
| 7MY2 | P0DTC2 | CryoEM structure of neutralizing nanobody Nb30 in complex with SARS-CoV2 spike | |
| 6XDG | P0DTC2 | Complex of SARS-CoV-2 receptor binding domain with the Fab fragments of two neutralizing antibodies | Spike glycoprotein, REGN10933 antibody Fab fragment light chain, REGN10933 antibody Fab fragment heavy chain, REGN10987 antibody Fab heavy chain, REGN10987 antibody Fab fragment light chain |
| 6ZOY | P0DTC2 | Structure of Disulphide-stabilized SARS-CoV-2 Spike Protein Trimer (x1 disulphide-bond mutant, S383C, D985C, K986P, V987P, single Arg S1/S2 cleavage site) in Closed State | Matrix protein 1 |
| 6ZXN | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 spike protein bound to neutralizing nanobodies (Ty1) | Spike glycoprotein, Nanobody Ty1 |
| 7CAI | P0DTC2 | SARS-CoV-2 S trimer with two RBDs in the open state and complexed with two H014 Fab | Spike glycoprotein, Light chain of H014 Fab, Heavy chain of H014 Fab |
| 7CAN | P0DTC2 | Structure of sybody MR17-K99Y in complex with the SARS-CoV-2 S Receptor-binding domain (RBD) | |
| 7CJF | P0DTC2 | Crystal structure of SARS-CoV-2 RBD in complex with a neutralizing antibody Fab | |
| 7CWM | P0DTC2 | Complex of SARS-CoV-2 spike protein and Fab P17 with one RBD in open state and two RBD in closed state | Spike glycoprotein, P17 heavy chain, P17 light chain |
| 7CWN | P0DTC2 | P17-H014 Fab cocktail in complex with SARS-CoV-2 spike protein | Spike glycoprotein, light chain of P17 Fab, heavy chain of P17 Fab, light chain of H014 Fab, heavy chain of H014 Fab |
| 7CWS | P0DTC2 | SARS-CoV-2 Spike Proteins Trimer in Complex with FC05 and H014 Fabs Cocktail | Heavy Chain of FC05 Fab, Light Chain of FC05 Fab, Light Chain of H014 Fab, Heavy Chain of H014 Fab, Spike glycoprotein |
| 7CWT | P0DTC2 | SARS-CoV-2 Spike protein in complex with hb27 and fc05 Fab cocktail | Spike glycoprotein, Light chain of hb27, Heavy chain of hb27, Heavy chain of fc05, Light chain of fc05 |
| 7CZP | P0DTC2 | S protein of SARS-CoV-2 in complex bound with P2B-1A1 | Spike glycoprotein, heavy chain of 4A8, light chain of 4A8 |
| 7CZS | P0DTC2 | S protein of SARS-CoV-2 in complex bound with P5A-1B8_3B | Spike glycoprotein, heavy chain of 4A8, light chain of 4A8 |
