Table Filtering
Submissions
GlyTouCan
Glycan Structure Repository
GlyComb
Glycoconjugate Repository
GlycoPOST
Glycomics MS raw data Repository
UniCarb-DR
Glycomics MS Repository for glycan annotations from GlycoWorkbench
All Resources
Genes / Proteins / Lipids Glycans / Glycoconjugates Glycomes Pathways / Interactions / Diseases / Organisms
GlycoNAVI Proteins
GlycoNAVI-Proteins is dataset of glycan and protein information. This is the content of GlycoNAVI.
| Source | Last Updated |
|---|---|
| GlycoNAVI Proteins | September 04, 2024 |
| PDB ID | UniProt ID ▲ | Title | Descriptor |
|---|---|---|---|
| 7JMW | P0DTC2 | Crystal structure of SARS-CoV-2 spike protein receptor-binding domain in complex with cross-neutralizing antibody COVA1-16 Fab | |
| 7JV4 | P0DTC2 | SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (one RBD open) | |
| 7JV6 | P0DTC2 | SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (closed conformation) | SARS-CoV-2 spike glycoprotein, S2H13 Fab heavy chain, S2H13 Fab light chain |
| 7JVA | P0DTC2 | SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment (local refinement of the receptor-binding domain and Fab variable domains) | S2A4 Fab heavy chain, S2A4 Fab light chain, SARS-CoV-2 spike glycoprotein |
| 7JVC | P0DTC2 | SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment | SARS-CoV-2 spike glycoprotein, S2A4 Fab heavy chain, S2A4 Fab light chain |
| 7JW0 | P0DTC2 | SARS-CoV-2 spike in complex with the S304 neutralizing antibody Fab fragment | SARS-CoV-2 spike glycoprotein, S304 Fab light chain, S304 Fab heavy chain |
| 7JWY | P0DTC2 | Structure of SARS-CoV-2 spike at pH 4.5 | |
| 7JX3 | P0DTC2 | Mapping neutralizing and immunodominant sites on the SARS-CoV-2 spike receptor-binding domain by structure-guided high-resolution serology | |
| 7JZL | P0DTC2 | SARS-CoV-2 spike in complex with LCB1 (2RBDs open) | Spike glycoprotein,LCB1 |
| 7JZM | P0DTC2 | SARS-CoV-2 spike in complex with LCB3 (local refinement of the RBD and LCB3) | LCB3,spike glycoprotein |
| 7JZN | P0DTC2 | SARS-CoV-2 spike in complex with LCB3 (2RBDs open) | Spike glycoprotein,LCB3 |
| 7JZU | P0DTC2 | SARS-CoV-2 spike in complex with LCB1 (local refinement of the RBD and LCB1) | LCB1,Spike glycoprotein |
| 7K43 | P0DTC2 | SARS-CoV-2 spike in complex with the S2M11 neutralizing antibody Fab fragment | SARS-CoV-2 spike glycoprotein, S2M11 Fab fragment (heavy chain), S2M11 Fab fragment (light chain) |
| 7K45 | P0DTC2 | SARS-CoV-2 spike in complex with the S2E12 neutralizing antibody Fab fragment (local refinement of the RBD and Fab variable domains) | |
| 7K4N | P0DTC2 | SARS-CoV-2 spike in complex with the S2E12 neutralizing antibody Fab fragment | Spike glycoprotein, S2E12 neutralizing antibody Fab fragment (heavy chain), S2E12 neutralizing antibody Fab fragment (light chain) |
| 7K8M | P0DTC2 | Structure of the SARS-CoV-2 receptor binding domain in complex with the human neutralizing antibody Fab fragment, C102 | |
| 7K8S | P0DTC2 | Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C002 (state 1) | Spike glycoprotein, C002 Fab Heavy Chain, C002 Fab Light Chain |
| 7K8T | P0DTC2 | Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, C002 (State 2) | Spike glycoprotein, C002 Fab Heavy Chain, C002 Fab Light Chain |
| 7K8U | P0DTC2 | Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, C104 | Spike glycoprotein, C104 Fab Heavy Chain, C104 Fab Light Chain |
| 7K8V | P0DTC2 | Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C110 | Spike glycoprotein, C110 Fab Heavy Chain, C110 Fab Light Chain |
| 7K8W | P0DTC2 | Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C119 | Spike glycoprotein, C119 Fab Light Chain, C119 Fab Heavy Chain |
| 7K8X | P0DTC2 | Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C121 (State 1) | Spike glycoprotein, C121 Fab Heavy chain, C121 Fab Light chain |
| 7K8Y | P0DTC2 | Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C121 (State 2) | Spike glycoprotein, C121 Fab Heavy chain, C121 Fab Light chain |
| 7K8Z | P0DTC2 | Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C135 | Spike glycoprotein, C135 Fab Light Chain, C135 Fab Heavy Chain |
| 7K90 | P0DTC2 | Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, C144 | Spike glycoprotein, C144 Fab Heavy Chain, C144 Fab Light Chain |
| 7K9Z | P0DTC2 | Crystal structure of SARS-CoV-2 receptor binding domain in complex with the Fab fragments of neutralizing antibodies 298 and 52 | |
| 7KDH | P0DTC2 | SARS-CoV-2 RBD up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS) | Spike glycoprotein |
| 7KEB | P0DTC2 | SARS-CoV-2 D614G 1RBD up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-D614G sub-classification) | Spike glycoprotein |
| 7KFW | P0DTC2 | Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-B3 Fab) | |
| 7KFX | P0DTC2 | Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-C2 Fab) | |
| 7KFY | P0DTC2 | Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-F10 Fab) | |
| 7KLG | P0DTC2 | SARS-CoV-2 RBD in complex with Fab 15033 | |
| 7KMB | P0DTC2 | ACE2-RBD Focused Refinement Using Symmetry Expansion of Applied C3 for Triple ACE2-bound SARS-CoV-2 Trimer Spike at pH 7.4 | |
| 7KMH | P0DTC2 | LY-CoV488 neutralizing antibody against SARS-CoV-2 | |
| 7KMI | P0DTC2 | LY-CoV481 neutralizing antibody against SARS-CoV-2 | |
| 7KMK | P0DTC2 | cryo-EM structure of SARS-CoV-2 spike in complex with Fab 15033-7, two RBDs bound | |
| 7KML | P0DTC2 | cryo-EM structure of SARS-CoV-2 spike in complex with Fab 15033-7, three RBDs bound | |
| 7KMS | P0DTC2 | Cryo-EM structure of triple ACE2-bound SARS-CoV-2 trimer spike at pH 7.4 | |
| 7KMZ | P0DTC2 | Cryo-EM structure of double ACE2-bound SARS-CoV-2 trimer Spike at pH 7.4 | |
| 7KN5 | P0DTC2 | Crystal structure of SARS-CoV-2 receptor binding domain complexed with nanobodies VHH E and U | |
| 7KN6 | P0DTC2 | Crystal structure of SARS-CoV-2 receptor binding domain complexed with nanobody VHH V and antibody Fab CC12.3 | |
| 7KN7 | P0DTC2 | Crystal structure of SARS-CoV-2 receptor binding domain complexed with nanobody VHH W and antibody Fab CC12.3 | |
| 7KNB | P0DTC2 | Cryo-EM structure of single ACE2-bound SARS-CoV-2 trimer spike at pH 7.4 | |
| 7KNE | P0DTC2 | Cryo-EM structure of single ACE2-bound SARS-CoV-2 trimer spike at pH 5.5 | |
| 7KNH | P0DTC2 | Cryo-EM Structure of Double ACE2-Bound SARS-CoV-2 Trimer Spike at pH 5.5 | |
| 7KNI | P0DTC2 | Cryo-EM structure of Triple ACE2-bound SARS-CoV-2 Trimer Spike at pH 5.5 | |
| 7KQB | P0DTC2 | SARS-CoV-2 spike glycoprotein:Fab 5A6 complex I | Spike glycoprotein, Fab 5A6 heavy chain, Fab 5A6 light chain |
| 7KRQ | P0DTC2 | Structural impact on SARS-CoV-2 spike protein by D614G substitution | Spike glycoprotein |
| 7KRR | P0DTC2 | Structural impact on SARS-CoV-2 spike protein by D614G substitution | Spike glycoprotein |
| 7KRS | P0DTC2 | Structural impact on SARS-CoV-2 spike protein by D614G substitution | Spike glycoprotein |
