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GlycoNAVI Proteins
GlycoNAVI-Proteins is dataset of glycan and protein information. This is the content of GlycoNAVI.
| Source | Last Updated |
|---|---|
| GlycoNAVI Proteins | September 04, 2024 |
| PDB ID | UniProt ID ▲ | Title | Descriptor |
|---|---|---|---|
| 7Q0I | P0DTC2 | Crystal structure of the N-terminal domain of SARS-CoV-2 beta variant spike glycoprotein in complex with Beta-43 | |
| 7SBK | P0DTC2 | Closed state of pre-fusion SARS-CoV-2 Delta variant spike protein | |
| 7SBL | P0DTC2 | One RBD-up 1 of pre-fusion SARS-CoV-2 Delta variant spike protein | |
| 7SBO | P0DTC2 | One RBD-up 2 of pre-fusion SARS-CoV-2 Delta variant spike protein | |
| 7SBP | P0DTC2 | Closed state of pre-fusion SARS-CoV-2 Kappa variant spike protein | |
| 7SBQ | P0DTC2 | One RBD-up 1 of pre-fusion SARS-CoV-2 Kappa variant spike protein | |
| 7SBR | P0DTC2 | One RBD-up 2 of pre-fusion SARS-CoV-2 Kappa variant spike protein | |
| 7SBS | P0DTC2 | One RBD-up 1 of pre-fusion SARS-CoV-2 Gamma variant spike protein | |
| 7SBT | P0DTC2 | One RBD-up 2 of pre-fusion SARS-CoV-2 Gamma variant spike protein | |
| 7DQA | P0DTC2 | Cryo-EM structure of SARS-CoV2 RBD-ACE2 complex | |
| 7K9I | P0DTC2 | SARS-CoV-2 Spike RBD in complex with neutralizing Fab 2B04 (local refinement) | |
| 7SXR | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 D614G mutant spike protein ectodomain | |
| 7SY3 | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement) | |
| 7T9L | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron spike protein in complex with human ACE2 (focused refinement of RBD and ACE2) | |
| 7V77 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 S-Beta variant (B.1.351), uncleavable form, two RBD-up conformation | |
| 7V7D | P0DTC2 | Cryo-EM structure of SARS-CoV-2 S-Kappa variant (B.1.617.1), all RBD-down conformation | |
| 7V7V | P0DTC2 | Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2), two RBD-up conformation 3 | |
| 7V7Z | P0DTC2 | Cryo-EM structure of SARS-CoV-2 S-Beta variant (B.1.351) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form | |
| 6M17 | P0DTC2 | The 2019-nCoV RBD/ACE2-B0AT1 complex | Sodium-dependent neutral amino acid transporter B(0)AT1, Angiotensin-converting enzyme 2 (E.C.3.4.17.23), SARS-coV-2 Receptor Binding Domain |
| 6VYB | P0DTC2 | SARS-CoV-2 spike ectodomain structure (open state) | spike glycoprotein |
| 6WPT | P0DTC2 | Structure of the SARS-CoV-2 spike glycoprotein in complex with the S309 neutralizing antibody Fab fragment (open state) | SARS-CoV-2 spike glycoprotein, S309 neutralizing antibody heavy chain, S309 neutralizing antibody light chain |
| 6WPT | P0DTC2 | Structure of the SARS-CoV-2 spike glycoprotein in complex with the S309 neutralizing antibody Fab fragment (open state) | SARS-CoV-2 spike glycoprotein, S309 neutralizing antibody heavy chain, S309 neutralizing antibody light chain |
| 6XF6 | P0DTC2 | Cryo-EM structure of a biotinylated SARS-CoV-2 spike probe in the prefusion state (1 RBD up) | Spike glycoprotein |
| 6ZP0 | P0DTC2 | Structure of SARS-CoV-2 Spike Protein Trimer (single Arg S1/S2 cleavage site) in Closed State | Matrix protein 1 |
| 7A29 | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 spike protein bound to neutralizing sybodies (Sb23) 2-up conformation | Spike glycoprotein, Neutralising sybody (Sb23) |
| 7A91 | P0DTC2 | Dissociated S1 domain of SARS-CoV-2 Spike bound to ACE2 (Non-Uniform Refinement) | Spike glycoprotein |
| 7B14 | P0DTC2 | Nanobody E bound to Spike-RBD in a localized reconstruction | |
| 7B18 | P0DTC2 | SARS-CoV-spike bound to two neutralising nanobodies | Spike glycoprotein, Nanobody against SARS-CoV-2 VHH E, Nanobody against spike glycoprotein VHH V |
| 7B3O | P0DTC2 | Crystal structure of the SARS-CoV-2 RBD in complex with STE90-C11 Fab | |
| 7CYV | P0DTC2 | Crystal structure of FD20, a neutralizing single-chain variable fragment (scFv) in complex with SARS-CoV-2 Spike receptor-binding domain (RBD) | |
| 7CZZ | P0DTC2 | S protein of SARS-CoV-2 in complex bound with P5A-2F11_3B | Spike glycoprotein, heavy chain of 4A8, light chain of 4A8 |
| 7DPM | P0DTC2 | Crystal structure of SARS-CoV-2 Spike RBD in complex with MW06 Fab | |
| 7DX1 | P0DTC2 | S protein of SARS-CoV-2 D614G mutant | Sodium-dependent neutral amino acid transporter B(0)AT1, Angiotensin-converting enzyme 2 (E.C.3.4.17.23) |
| 7DX6 | P0DTC2 | S protein of SARS-CoV-2 bound with PD of ACE2 in the conformation 3 (2 up RBD and 1 PD bound) | Sodium-dependent neutral amino acid transporter B(0)AT1, Angiotensin-converting enzyme 2 (E.C.3.4.17.23) |
| 7E3C | P0DTC2 | SARS-CoV-2 spike in complex with the Ab1 neutralizing antibody (focused refinement on Fab-RBD) | |
| 7EB4 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Spike D614G variant, two RBD-up conformation 1 | |
| 7EDH | P0DTC2 | Cryo-EM structure of SARS-CoV-2 S-UK variant (B.1.1.7), one RBD-up conformation 3 | |
| 7FDH | P0DTC2 | SARS-COV-2 Spike RBDMACSp25 binding to hACE2 | |
| 7JJI | P0DTC2 | Structure of SARS-CoV-2 3Q-2P full-length prefusion spike trimer (C3 symmetry) | Spike glycoprotein |
| 7KJ5 | P0DTC2 | SARS-CoV-2 Spike Glycoprotein, prefusion with one RBD up conformation | Spike glycoprotein |
| 7L06 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 2P S ectodomain bound to two copies of domain-swapped antibody 2G12 | 2G12 heavy chain, 2G12 light chain, Spike glycoprotein |
| 7L09 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 2P S ectodomain bound domain-swapped antibody 2G12 from masked 3D refinement | 2G12 heavy chain, 2G12 light chain, Spike glycoprotein |
| 7L2E | P0DTC2 | Cryo-EM structure of NTD-directed neutralizing antibody 4-18 in complex with prefusion SARS-CoV-2 spike glycoprotein | |
| 7LOP | P0DTC2 | Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies CV05-163 and CR3022 | |
| 7LQV | P0DTC2 | Cryo-EM structure of NTD-directed neutralizing antibody 4-8 Fab in complex with SARS-CoV-2 S2P spike | SARS-CoV-2 spike glycoprotein, neutralizing antibody 4-8 Fab |
| 7LXW | P0DTC2 | SARS-CoV-2 S/S2M11/S2X333 Local Refinement | S2X333 Fab Light Chain variable region, S2X333 Fab Heavy Chain variable region, Spike glycoprotein |
| 7M6I | P0DTC2 | Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, BG1-24 | Spike glycoprotein, BG1-24 Fab Light Chain, BG1-24 Fab Heavy Chain |
| 7M7W | P0DTC2 | Antibodies to the SARS-CoV-2 receptor-binding domain that maximize breadth and resistance to viral escape | |
| 7M8K | P0DTC2 | Cryo-EM structure of Brazil (P.1) SARS-CoV-2 spike glycoprotein variant in the prefusion state (1 RBD up) | Spike glycoprotein |
| 7CZX | P0DTC2 | S protein of SARS-CoV-2 in complex bound with P5A-1B9 | Spike glycoprotein, heavy chain of 4A8, light chain of 4A8 |
