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GlycoNAVI Proteins
GlycoNAVI-Proteins is dataset of glycan and protein information. This is the content of GlycoNAVI.
| Source | Last Updated |
|---|---|
| GlycoNAVI Proteins | September 04, 2024 |
| PDB ID | UniProt ID ▼ | Title | Descriptor |
|---|---|---|---|
| 1NEZ | P01731 | The Crystal Structure of a TL/CD8aa Complex at 2.1A resolution:Implications for Memory T cell Generation, Co-receptor Preference and Affinity | H-2 class I histocompatibility antigen, TLA(C) alpha chain/Beta-2-microglobulin/T-cell surface glycoprotein CD8 alpha chain |
| 2ATP | P01731 | Crystal structure of a CD8ab heterodimer | |
| 3B9K | P01731 | Crystal structure of CD8alpha-beta in complex with YTS 156.7 FAB | Crystal structure of CD8alpha-beta in complex with YTS 156.7 FAB |
| 6OPO | P01730 | Symmetric model of CD4- and 17-bound B41 HIV-1 Env SOSIP in complex with DDM | Envelope glycoprotein gp160, 17b Fab light chain, Envelope glycoprotein gp41, T-cell surface glycoprotein CD4, 17b Fab heavy chain |
| 6U0N | P01730 | Asymmetrically open conformational state (Class II) of HIV-1 Env trimer BG505 SOSIP.664 in complex with sCD4 and E51 Fab | HIV-1 envelope glycoprotein gp120, T-cell surface glycoprotein CD4, E51 Fab heavy chain, E51 Fab light chain, HIV-1 envelope glycoprotein gp41 |
| 6L1Y | P01730 | structure of gp120/CD4 with a non-canonical surface | |
| 6OPQ | P01730 | CD4- and 17-bound HIV-1 Env B41 SOSIP frozen with LMNG | Envelope glycoprotein gp160, 17b Fab light chain, Envelope glycoprotein gp41, T-cell surface glycoprotein CD4, 17b Fab heavy chain |
| 6U0L | P01730 | Asymmetrically open conformational state (Class I) of HIV-1 Env trimer BG505 SOSIP.664 in complex with sCD4 and E51 Fab | |
| 5THR | P01730 | Cryo-EM structure of a BG505 Env-sCD4-17b-8ANC195 complex | T-cell surface glycoprotein CD4, 17b Fab VH domain, BG505 SOSIP gp41 monomer, clade A/E 93TH057 HIV-1 gp120 core, 17b Fb VL domain, 8ANC195 G52K5 VH domain, 8ANC195 G52K5 VL domain |
| 6CM3 | P01730 | BG505 SOSIP in complex with sCD4, 17b, 8ANC195 | Envelope glycoprotein gp160, T-cell surface glycoprotein CD4, 17b Fab light chain, 17b Fab heavy chain, 8ANC195 Fab heavy chain, 8ANC195 Fab light chain |
| 6MEO | P01730 | Structural basis of coreceptor recognition by HIV-1 envelope spike | Envelope glycoprotein gp160, T-cell surface glycoprotein CD4, C-C chemokine receptor type 5 |
| 6OPN | P01730 | CD4- and 17-bound HIV-1 Env B41 SOSIP in complex with small molecule GO35 | Envelope glycoprotein gp160, Envelope glycoprotein gp41, T-cell surface glycoprotein CD4 |
| 6OPP | P01730 | Asymmetric model of CD4- and 17-bound B41 HIV-1 Env SOSIP in complex with DDM | 17b Fab light chain, Envelope glycoprotein gp41, Envelope glycoprotein gp160, T-cell surface glycoprotein CD4, 17b Fab heavy chain |
| 6X5B | P01730 | Symmetric model of CD4- and 17-bound B41 HIV-1 Env SOSIP in complex with small molecule GO52 | Envelope glycoprotein gp160, 17b Fab light chain, Envelope glycoprotein gp41, T-cell surface glycoprotein CD4, 17b Fab heavy chain |
| 6X5C | P01730 | Asymmetric model of CD4-bound B41 HIV-1 Env SOSIP in complex with small molecule GO52 | Envelope glycoprotein gp160, 17b Fab light chain, Envelope glycoprotein gp41, T-cell surface glycoprotein CD4, 17b Fab heavy chain |
| 5VN3 | P01730 | Cryo-EM model of B41 SOSIP.664 in complex with soluble CD4 (D1-D2) and fragment antigen binding variable domain of 17b | 17b Fab light chain, Envelope glycoprotein gp160, T-cell surface glycoprotein CD4, 17b Fab heavy chain |
| 6EDU | P01730 | B41 SOSIP.664 in complex with soluble CD4 (D1-D2), the co-receptor mimicking antibody 21c and the broadly neutralizing antibody 8ANC195 | Envelope glycoprotein gp160, PG9 Fab heavy chain,PG9 Fab heavy chain, PG9 Fab light chain,PG9 Fab light chain, 8ANC195 Fab heavy chain,8ANC195 Fab heavy chain, 8ANC195 Fab light chain,8ANC195 Fab light chain |
| 1G9M | P01730 | HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B | |
| 1G9N | P01730 | HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B | |
| 1GC1 | P01730 | HIV-1 GP120 CORE COMPLEXED WITH CD4 AND A NEUTRALIZING HUMAN ANTIBODY | |
| 1RZJ | P01730 | HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B | |
| 1RZK | P01730 | HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B | |
| 2B4C | P01730 | Crystal structure of HIV-1 JR-FL gp120 core protein containing the third variable region (V3) complexed with CD4 and the X5 antibody | |
| 2NXY | P01730 | HIV-1 gp120 Envelope Glycoprotein(S334A) Complexed with CD4 and Antibody 17b | |
| 2NXZ | P01730 | HIV-1 gp120 Envelope Glycoprotein (T257S, S334A, S375W) Complexed with CD4 and Antibody 17b | |
| 2NY0 | P01730 | HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, T257S, V275C, S334A, S375W, A433M) Complexed with CD4 and Antibody 17b | |
| 2NY1 | P01730 | HIV-1 gp120 Envelope Glycoprotein (I109C, T257S, S334A, S375W, Q428C) Complexed with CD4 and Antibody 17b | |
| 2NY2 | P01730 | HIV-1 gp120 Envelope Glycoprotein (T123C, T257S, S334A, S375W, G431C) Complexed with CD4 and Antibody 17b | |
| 2NY3 | P01730 | HIV-1 gp120 Envelope Glycoprotein (K231C, T257S, E267C, S334A, S375W) Complexed with CD4 and Antibody 17b | |
| 2NY4 | P01730 | HIV-1 gp120 Envelope Glycoprotein (K231C, T257S, E268C, S334A, S375W) Complexed with CD4 and Antibody 17b | |
| 2NY5 | P01730 | HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, I109C, T257S, V275C, S334A, S375W, Q428C, A433M) Complexed with CD4 and Antibody 17b | |
| 2NY6 | P01730 | HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, I109C, T123C, T257S, V275C,S334A, S375W, Q428C, G431C) Complexed with CD4 and Antibody 17b | |
| 2QAD | P01730 | Structure of tyrosine-sulfated 412d antibody complexed with HIV-1 YU2 gp120 and CD4 | |
| 3JWD | P01730 | Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility | |
| 3JWO | P01730 | Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility | |
| 3LQA | P01730 | Crystal structure of clade C gp120 in complex with sCD4 and 21c Fab | |
| 4H8W | P01730 | Crystal structure of non-neutralizing and ADCC-potent antibody N5-i5 in complex with HIV-1 clade A/E gp120 and sCD4. | |
| 4JM2 | P01730 | Crystal Structure of PGT 135 Fab in Complex with gp120 Core Protein from HIV-1 Strain JR-FL Bound to CD4 and 17b Fab | PGT 135 Heavy chain, PGT 135 Light chain, 17b Light chain, 17b Heavy chain, HIV-1 JRFL gp120 core with mini V3 loop, T-cell surface glycoprotein CD4 |
| 4P9H | P01730 | Crystal structure of 8ANC195 Fab in complex with gp120 of 93TH057 HIV-1 and soluble CD4 D1D2 | |
| 4R2G | P01730 | Crystal Structure of PGT124 Fab bound to HIV-1 JRCSF gp120 core and to CD4 | Surface protein gp160, T-cell surface glycoprotein CD4, PGT124 Heavy Chain, PGT124 Light Chain |
| 4R4H | P01730 | Crystal structure of non-neutralizing, A32-like antibody 2.2c in complex with HIV-1 Env gp120 | HIV-1 89.6P gp120, T-cell surface glycoprotein CD4, Antibody 2.2c, Light chain, Antibody 2.2c, Heavy chain |
| 4RQS | P01730 | Crystal structure of fully glycosylated HIV-1 gp120 core bound to CD4 and 17b Fab | 2-domain CD4, 17b Fab Light Chain, 17b Fab Heavy Chain, HIV-1 YU2 gp120 core |
| 5A7X | P01730 | negative stain EM of BG505 SOSIP.664 in complex with sCD4, 17b, and 8ANC195 | HIV-1 YU2 GP120, T-CELL SURFACE GLYCOPROTEIN CD4, FAB OF BROADLY NEUTRALIZING ANTIBODY 17B, FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195 |
| 5A8H | P01730 | cryo-ET subtomogram averaging of BG505 SOSIP.664 in complex with sCD4, 17b, and 8ANC195 | HIV-1 GP120, T-CELL SURFACE GLYCOPROTEIN CD4, FAB OF BROADLY NEUTRALIZING ANTIBODY 17B, FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195 VARIANT G52K5 |
| 5CAY | P01730 | Envelope glycoprotein gp120 core from HIV type 2 bound to the first two domains of human soluble CD4 receptor | |
| 6MET | P01730 | Structural basis of coreceptor recognition by HIV-1 envelope spike | Envelope glycoprotein gp160, T-cell surface glycoprotein CD4, C-C chemokine receptor type 5 |
| 7TXD | P01730 | Cryo-EM structure of BG505 SOSIP HIV-1 Env trimer in complex with CD4 receptor (D1D2) and broadly neutralizing darpin bnD.9 | |
| 8FYI | P01730 | Structure of HIV-1 BG505 SOSIP-HT1 in complex with one CD4 molecule | |
| 8FYJ | P01730 | Structure of HIV-1 BG505 SOSIP-HT2 in complex with two CD4 molecules (class I) | |
| 7T0R | P01730 | Crystal structure of the anti-CD4 adnectin 6940_B01 as a complex with the extracellular domains of CD4 and ibalizumab fAb |
