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GlycoNAVI Proteins
GlycoNAVI-Proteins is dataset of glycan and protein information. This is the content of GlycoNAVI.
| Source | Last Updated |
|---|---|
| GlycoNAVI Proteins | October 09, 2024 |
| PDB ID | UniProt ID ▼ | Title | Descriptor |
|---|---|---|---|
| 3X2H | B3Y002 | X-ray structure of PcCel45A N92D with cellopentaose at 95K. | Endoglucanase V-like protein |
| 3X2K | B3Y002 | X-ray structure of PcCel45A D114N with cellopentaose at 95K. | Endoglucanase V-like protein |
| 3X2M | B3Y002 | X-ray structure of PcCel45A with cellopentaose at 0.64 angstrom resolution. | Endoglucanase V-like protein |
| 3X2P | B3Y002 | Neutron and X-ray joint refined structure of PcCel45A with cellopentaose at 298K. | Endoglucanase V-like protein |
| 5KJQ | B3Y002 | X-ray structure of PcCel45A in complex with cellobiose expressed in Aspergillus nidullans | |
| 6ZV5 | B3VS76 | CML1 crystal structure in complex with Lewis a tetrasaccharide | |
| 6ZU2 | B3VS76 | CML1 crystal structure in complex with H-type 1 trisaccharide | |
| 4B8V | B3VBK9 | Cladosporium fulvum LysM effector Ecp6 in complex with a beta-1,4- linked N-acetyl-D-glucosamine tetramer | EXTRACELLULAR PROTEIN 6 |
| 4B9H | B3VBK9 | Cladosporium fulvum LysM effector Ecp6 in complex with a beta-1,4- linked N-acetyl-D-glucosamine tetramer: I3C heavy atom derivative | EXTRACELLULAR PROTEIN 6 |
| 4PN6 | B3UWV7 | Structure of the Cytomegalovirus-Encoded m04 Glycoprotein | |
| 6MDT | B3UF58 | Crystal structure of the B41 SOSIP.664 Env trimer with PGT124 and 35O22 Fabs, in P63 space group | |
| 6MCO | B3UF08 | Crystal structure of the B41 SOSIP.664 Env trimer with PGT124 and 35O22 Fabs, in P23 space group | |
| 6OPO | B3UEZ6 | Symmetric model of CD4- and 17-bound B41 HIV-1 Env SOSIP in complex with DDM | Envelope glycoprotein gp160, 17b Fab light chain, Envelope glycoprotein gp41, T-cell surface glycoprotein CD4, 17b Fab heavy chain |
| 6U59 | B3UEZ6 | HIV-1 B41 SOSIP.664 in complex with rabbit antibody 13B | SOSIP.664 gp120, SOSIP.664 gp41, rabbit antibody 13B Fragment antigen binding light chain, rabbit antibody 13B Fragment antigen binding heavy chain |
| 6MUF | B3UEZ6 | Crystal Structure of HIV-1 B41 SOSIP.664 Prefusion Env Trimer in Complex with Human Antibodies 3H109L and 35O22 at 3.4 Angstrom | Envelope glycoprotein gp160, 35O22 scFv heavy chain portion, 35O22 scFv light chain portion, 3H109L Fab heavy chain, 3H109L Fab light chain |
| 6OPQ | B3UEZ6 | CD4- and 17-bound HIV-1 Env B41 SOSIP frozen with LMNG | Envelope glycoprotein gp160, 17b Fab light chain, Envelope glycoprotein gp41, T-cell surface glycoprotein CD4, 17b Fab heavy chain |
| 6CH9 | B3UEZ6 | Crystal structure of a natively-glycosylated B41 SOSIP.664 HIV-1 Envelope Trimer in complex with the broadly-neutralizing antibodies BG18 and 35O22 | |
| 6OPN | B3UEZ6 | CD4- and 17-bound HIV-1 Env B41 SOSIP in complex with small molecule GO35 | Envelope glycoprotein gp160, Envelope glycoprotein gp41, T-cell surface glycoprotein CD4 |
| 6OPP | B3UEZ6 | Asymmetric model of CD4- and 17-bound B41 HIV-1 Env SOSIP in complex with DDM | 17b Fab light chain, Envelope glycoprotein gp41, Envelope glycoprotein gp160, T-cell surface glycoprotein CD4, 17b Fab heavy chain |
| 6X5B | B3UEZ6 | Symmetric model of CD4- and 17-bound B41 HIV-1 Env SOSIP in complex with small molecule GO52 | Envelope glycoprotein gp160, 17b Fab light chain, Envelope glycoprotein gp41, T-cell surface glycoprotein CD4, 17b Fab heavy chain |
| 6X5C | B3UEZ6 | Asymmetric model of CD4-bound B41 HIV-1 Env SOSIP in complex with small molecule GO52 | Envelope glycoprotein gp160, 17b Fab light chain, Envelope glycoprotein gp41, T-cell surface glycoprotein CD4, 17b Fab heavy chain |
| 5VN3 | B3UEZ6 | Cryo-EM model of B41 SOSIP.664 in complex with soluble CD4 (D1-D2) and fragment antigen binding variable domain of 17b | 17b Fab light chain, Envelope glycoprotein gp160, T-cell surface glycoprotein CD4, 17b Fab heavy chain |
| 5VN8 | B3UEZ6 | Cryo-EM model of B41 SOSIP.664 in complex with fragment antigen binding variable domain of b12 | Envelope glycoprotein gp160, b12 Fab heavy chain, b12 Fab light chain |
| 6EDU | B3UEZ6 | B41 SOSIP.664 in complex with soluble CD4 (D1-D2), the co-receptor mimicking antibody 21c and the broadly neutralizing antibody 8ANC195 | Envelope glycoprotein gp160, PG9 Fab heavy chain,PG9 Fab heavy chain, PG9 Fab light chain,PG9 Fab light chain, 8ANC195 Fab heavy chain,8ANC195 Fab heavy chain, 8ANC195 Fab light chain,8ANC195 Fab light chain |
| 6OKP | B3UEZ6 | B41 SOSIP.664 in complex with the silent-face antibody SF12 and V3-targeting antibody 10-1074 | Envelope glycoprotein gp41, Envelope glycoprotein gp120, 10-1074 Heavy Chain,10-1074 Light Chain, SF12 Heavy Chain,SF12 Light Chain |
| 6MUG | B3UEZ6 | Crystal Structure of HIV-1 B41 SOSIP.664 Prefusion Env Trimer Bound to Small Molecule HIV-1 Entry Inhibitor BMS-386150 in Complex with Human Antibodies 3H109L and 35O22 at 3.8 Angstrom | Envelope glycoprotein gp160, 35O22 scFv heavy chain portion, 35O22 scFv light chain portion, 3H109L Fab heavy chain, 3H109L Fab light chain |
| 6OPO | B3UES2 | Symmetric model of CD4- and 17-bound B41 HIV-1 Env SOSIP in complex with DDM | Envelope glycoprotein gp160, 17b Fab light chain, Envelope glycoprotein gp41, T-cell surface glycoprotein CD4, 17b Fab heavy chain |
| 6U59 | B3UES2 | HIV-1 B41 SOSIP.664 in complex with rabbit antibody 13B | SOSIP.664 gp120, SOSIP.664 gp41, rabbit antibody 13B Fragment antigen binding light chain, rabbit antibody 13B Fragment antigen binding heavy chain |
| 6U59 | B3UES2 | HIV-1 B41 SOSIP.664 in complex with rabbit antibody 13B | SOSIP.664 gp120, SOSIP.664 gp41, rabbit antibody 13B Fragment antigen binding light chain, rabbit antibody 13B Fragment antigen binding heavy chain |
| 6MDT | B3UES2 | Crystal structure of the B41 SOSIP.664 Env trimer with PGT124 and 35O22 Fabs, in P63 space group | |
| 6MUF | B3UES2 | Crystal Structure of HIV-1 B41 SOSIP.664 Prefusion Env Trimer in Complex with Human Antibodies 3H109L and 35O22 at 3.4 Angstrom | Envelope glycoprotein gp160, 35O22 scFv heavy chain portion, 35O22 scFv light chain portion, 3H109L Fab heavy chain, 3H109L Fab light chain |
| 6OPQ | B3UES2 | CD4- and 17-bound HIV-1 Env B41 SOSIP frozen with LMNG | Envelope glycoprotein gp160, 17b Fab light chain, Envelope glycoprotein gp41, T-cell surface glycoprotein CD4, 17b Fab heavy chain |
| 6CH9 | B3UES2 | Crystal structure of a natively-glycosylated B41 SOSIP.664 HIV-1 Envelope Trimer in complex with the broadly-neutralizing antibodies BG18 and 35O22 | |
| 6OPN | B3UES2 | CD4- and 17-bound HIV-1 Env B41 SOSIP in complex with small molecule GO35 | Envelope glycoprotein gp160, Envelope glycoprotein gp41, T-cell surface glycoprotein CD4 |
| 6OPP | B3UES2 | Asymmetric model of CD4- and 17-bound B41 HIV-1 Env SOSIP in complex with DDM | 17b Fab light chain, Envelope glycoprotein gp41, Envelope glycoprotein gp160, T-cell surface glycoprotein CD4, 17b Fab heavy chain |
| 6X5B | B3UES2 | Symmetric model of CD4- and 17-bound B41 HIV-1 Env SOSIP in complex with small molecule GO52 | Envelope glycoprotein gp160, 17b Fab light chain, Envelope glycoprotein gp41, T-cell surface glycoprotein CD4, 17b Fab heavy chain |
| 6X5C | B3UES2 | Asymmetric model of CD4-bound B41 HIV-1 Env SOSIP in complex with small molecule GO52 | Envelope glycoprotein gp160, 17b Fab light chain, Envelope glycoprotein gp41, T-cell surface glycoprotein CD4, 17b Fab heavy chain |
| 5VN3 | B3UES2 | Cryo-EM model of B41 SOSIP.664 in complex with soluble CD4 (D1-D2) and fragment antigen binding variable domain of 17b | 17b Fab light chain, Envelope glycoprotein gp160, T-cell surface glycoprotein CD4, 17b Fab heavy chain |
| 5VN8 | B3UES2 | Cryo-EM model of B41 SOSIP.664 in complex with fragment antigen binding variable domain of b12 | Envelope glycoprotein gp160, b12 Fab heavy chain, b12 Fab light chain |
| 6EDU | B3UES2 | B41 SOSIP.664 in complex with soluble CD4 (D1-D2), the co-receptor mimicking antibody 21c and the broadly neutralizing antibody 8ANC195 | Envelope glycoprotein gp160, PG9 Fab heavy chain,PG9 Fab heavy chain, PG9 Fab light chain,PG9 Fab light chain, 8ANC195 Fab heavy chain,8ANC195 Fab heavy chain, 8ANC195 Fab light chain,8ANC195 Fab light chain |
| 6OKP | B3UES2 | B41 SOSIP.664 in complex with the silent-face antibody SF12 and V3-targeting antibody 10-1074 | Envelope glycoprotein gp41, Envelope glycoprotein gp120, 10-1074 Heavy Chain,10-1074 Light Chain, SF12 Heavy Chain,SF12 Light Chain |
| 6MCO | B3UES2 | Crystal structure of the B41 SOSIP.664 Env trimer with PGT124 and 35O22 Fabs, in P23 space group | |
| 6MUG | B3UES2 | Crystal Structure of HIV-1 B41 SOSIP.664 Prefusion Env Trimer Bound to Small Molecule HIV-1 Entry Inhibitor BMS-386150 in Complex with Human Antibodies 3H109L and 35O22 at 3.8 Angstrom | Envelope glycoprotein gp160, 35O22 scFv heavy chain portion, 35O22 scFv light chain portion, 3H109L Fab heavy chain, 3H109L Fab light chain |
| 4H04 | B3TLD6 | Lacto-N-biosidase from Bifidobacterium bifidum | Lacto-N-biosidase (E.C.3.2.1.140) |
| 4JAW | B3TLD6 | Crystal Structure of Lacto-N-Biosidase from Bifidobacterium bifidum complexed with LNB-thiazoline | |
| 5BXP | B3TLD6 | LNBase in complex with LNB-LOGNAc | |
| 5BXR | B3TLD6 | LNBase in complex with LNB-NHAcDNJ | |
| 5BXS | B3TLD6 | LNBase in complex with LNB-NHAcCAS | |
| 5BXT | B3TLD6 | LNBase in complex with LNB-NHAcAUS | |
| 5FKS | B3PKK9 | Unraveling the first step of xyloglucan degradation by the soil saprophyte Cellvibrio japonicus through the functional and structural characterization of a potent GH74 endo-xyloglucanase |
