GlyCosmos Portal

GlyCosmos Glycoproteins

Integrated list of glycoproteins extracted from UniProt and annotated with glycosylation data from GlyGen and GlyConnect. For each entry, information such as glycosylation site, glycans, diseases, 3D structures, and pathway information are available.

Database	Last Updated
GlyConnect	April 19, 2023
GlycoProtDB	October 1, 2021
GlyGen	October 2, 2023
Human Protein Atlas	June 19, 2023 (Protein Atlas version 23)
MCAW-DB	July 10, 2019
The O-GlcNAc Database	April 10, 2023 (v1.3)
Reactome	February 28, 2024 (Version 87)
UniProt	December 27, 2023

Protein Name	UniProt ID	Gene Symbol	Gene Symbol Aliases	Gene Symbol All	Species	Taxonomy ID	No. of Glycosylation Sites	No. of GlyTouCan IDs ▲	GO Labels	GO IDs
Ras-related protein Rab-39A	Q8BHD0	Rab39a	Rab39	Rab39a Rab39	Mus musculus	10090		1	GTP binding GTPase activity Rab protein signal transduction autophagy lysosome phagocytic vesicle phagocytic vesicle membrane phagosome acidification phagosome-lysosome fusion plasma membrane protein transport vesicle-mediated transport	GO:0003924 GO:0005525 GO:0005764 GO:0005886 GO:0006914 GO:0015031 GO:0016192 GO:0030670 GO:0032482 GO:0045335 GO:0090383 GO:0090385
WW domain-binding protein 11	Q9Y2W2	WBP11	NPWBP SIPP1 SNP70	WBP11 NPWBP SIPP1 SNP70	Homo sapiens	9606	3	1	RNA binding RNA splicing WW domain binding cytosol intracellular membrane-bounded organelle mRNA processing nucleoplasm nucleus rRNA processing single-stranded DNA binding	GO:0003697 GO:0003723 GO:0005634 GO:0005654 GO:0005829 GO:0006364 GO:0006397 GO:0008380 GO:0043231 GO:0050699
Myotubularin-related protein 3	Q13615	MTMR3	KIAA0371 ZFYVE10	MTMR3 KIAA0371 ZFYVE10	Homo sapiens	9606	3	1	cellular response to glucose starvation cytoplasm cytosol macroautophagy membrane metal ion binding phosphatidylinositol 5-phosphate metabolic process phosphatidylinositol biosynthetic process phosphatidylinositol dephosphorylation phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity phosphatidylinositol-3-phosphate phosphatase activity protein dephosphorylation protein phosphatase binding protein serine/threonine phosphatase activity protein tyrosine phosphatase activity protein tyrosine/serine/threonine phosphatase activity regulation of autophagosome assembly regulation of autophagy regulation of phosphatidylinositol dephosphorylation	GO:0004438 GO:0004722 GO:0004725 GO:0005737 GO:0005829 GO:0006470 GO:0006661 GO:0008138 GO:0010506 GO:0016020 GO:0016236 GO:0019903 GO:0042149 GO:0046856 GO:0046872 GO:0052629 GO:0060304 GO:1904562 GO:2000785
NUP-1 protein	V5BE13	TCDM_05455		TCDM_05455	Trypanosoma cruzi Dm28c	1416333		1
Histone H3.1t	Q16695	H3-4	H3FT HIST3H3	H3-4 H3FT HIST3H3	Homo sapiens	9606		1	DNA binding chromatin organization chromosome, telomeric region extracellular exosome nucleoplasm nucleosome nucleosome assembly nucleus protein heterodimerization activity structural constituent of chromatin	GO:0000781 GO:0000786 GO:0003677 GO:0005634 GO:0005654 GO:0006325 GO:0006334 GO:0030527 GO:0046982 GO:0070062
Cyclin-dependent kinase 12	Q9NYV4	CDK12	CRK7 CRKRS KIAA0904	CDK12 CRK7 CRKRS KIAA0904	Homo sapiens	9606	15	1	ATP binding RNA polymerase II CTD heptapeptide repeat kinase activity RNA splicing cyclin K-CDK12 complex cyclin binding cyclin-dependent protein serine/threonine kinase activity cyclin/CDK positive transcription elongation factor complex mRNA processing negative regulation of stem cell differentiation nuclear cyclin-dependent protein kinase holoenzyme complex nuclear speck nucleoplasm nucleus positive regulation of transcription by RNA polymerase II positive regulation of transcription elongation by RNA polymerase II protein autophosphorylation protein kinase activity protein kinase binding protein serine kinase activity regulation of MAP kinase activity transcription by RNA polymerase II	GO:0002944 GO:0004672 GO:0004693 GO:0005524 GO:0005634 GO:0005654 GO:0006366 GO:0006397 GO:0008024 GO:0008353 GO:0008380 GO:0016607 GO:0019901 GO:0019908 GO:0030332 GO:0032968 GO:0043405 GO:0045944 GO:0046777 GO:0106310 GO:2000737
RELT-like protein 1	Q8IUW5	RELL1		RELL1	Homo sapiens	9606	2	1	microtubule cytoskeleton plasma membrane positive regulation of p38MAPK cascade	GO:0005886 GO:0015630 GO:1900745
Nuclear cap binding complex subunit CBP110	V5BMA7	TCDM_04079		TCDM_04079	Trypanosoma cruzi Dm28c	1416333		1	nuclear cap binding complex	GO:0005846
Uncharacterized protein At3g50600	Q93YU3	At3g50590		At3g50590	Arabidopsis thaliana	3702		1	autophagosome assembly	GO:0000045
Methylmalonyl-CoA mutase, mitochondrial	P22033	MMUT	MUT	MMUT MUT	Homo sapiens	9606		1	GTPase activity cobalamin binding cytoplasm homocysteine metabolic process identical protein binding metal ion binding methylmalonyl-CoA mutase activity mitochondrial matrix mitochondrion modified amino acid binding positive regulation of GTPase activity post-embryonic development propionate metabolic process, methylmalonyl pathway protein homodimerization activity succinyl-CoA biosynthetic process	GO:0003924 GO:0004494 GO:0005737 GO:0005739 GO:0005759 GO:0009791 GO:0019678 GO:0031419 GO:0042802 GO:0042803 GO:0043547 GO:0046872 GO:0050667 GO:0072341 GO:1901290