GlyCosmos Portal

GlyCosmos Glycoproteins

Integrated list of glycoproteins extracted from UniProt and annotated with glycosylation data from GlyGen and GlyConnect. For each entry, information such as glycosylation site, glycans, diseases, 3D structures, and pathway information are available.

Database	Last Updated
GlyConnect	April 19, 2023
GlycoProtDB	October 1, 2021
GlyGen	October 2, 2023
Human Protein Atlas	June 19, 2023 (Protein Atlas version 23)
MCAW-DB	July 10, 2019
The O-GlcNAc Database	April 10, 2023 (v1.3)
Reactome	February 28, 2024 (Version 87)
UniProt	December 27, 2023

Protein Name	UniProt ID	Gene Symbol	Species	Taxonomy ID	GO Labels	GO IDs
Large ribosomal subunit protein uL11	P35979	Rpl12	Mus musculus	10090	cytoplasm cytoplasmic translation cytosol cytosolic large ribosomal subunit cytosolic ribosome large ribosomal subunit rRNA binding nucleolus nucleus postsynapse postsynaptic density presynapse ribosome structural constituent of ribosome synapse translation translation at postsynapse translation at presynapse	GO:0002181 GO:0003735 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0014069 GO:0022625 GO:0022626 GO:0045202 GO:0070180 GO:0098793 GO:0098794 GO:0140236 GO:0140242
2',5'-phosphodiesterase 12	Q3TIU4	Pde12	Mus musculus	10090	3'-5'-RNA exonuclease activity antiviral innate immune response cellular response to dsRNA cellular response to interferon-alpha cellular response to type II interferon exonuclease activity mRNA processing metal ion binding mitochondrial mRNA catabolic process mitochondrial matrix mitochondrion nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay obsolete nucleic acid phosphodiester bond hydrolysis poly(A)-specific ribonuclease activity positive regulation of viral genome replication regulation of mitochondrial mRNA stability	GO:0000175 GO:0000288 GO:0000958 GO:0004527 GO:0004535 GO:0005739 GO:0005759 GO:0006397 GO:0035457 GO:0044528 GO:0045070 GO:0046872 GO:0071346 GO:0071359 GO:0090305 GO:0140374
TROVE domain-containing protein	V5BPU0	TCDM_01265	Trypanosoma cruzi Dm28c	1416333	RNA binding	GO:0003723
Mitochondrial potassium channel	Q96ER9	CCDC51	Homo sapiens	9606	cell volume homeostasis mitochondrial ATP-gated potassium channel activity mitochondrial ATP-gated potassium channel complex mitochondrial inner membrane mitochondrial potassium ion transmembrane transport potassium ion transmembrane transport	GO:0005743 GO:0006884 GO:0062156 GO:0062157 GO:0071805 GO:0140141
Probable ATP-dependent RNA helicase DDX5	A0A8I5ZKV9	Ddx5	Rattus norvegicus	10116	ATP binding BMP signaling pathway MH2 domain binding R-SMAD binding RNA binding RNA helicase activity SMAD binding alternative mRNA splicing, via spliceosome androgen receptor signaling pathway calcium-dependent protein binding calmodulin binding catalytic step 2 spliceosome circadian rhythm cytoplasm enzyme binding epithelial to mesenchymal transition hydrolase activity intracellular estrogen receptor signaling pathway intrinsic apoptotic signaling pathway by p53 class mediator mRNA 3'-UTR binding mRNA transcription miRNA transcription myoblast differentiation negative regulation of transcription by RNA polymerase II nuclear androgen receptor binding nuclear speck nuclear-transcribed mRNA catabolic process nucleolus nucleus positive regulation of DNA damage response, signal transduction by p53 class mediator positive regulation of DNA-templated transcription pre-mRNA binding primary miRNA binding primary miRNA processing promoter-specific chromatin binding protein import into nucleus regulation of alternative mRNA splicing, via spliceosome regulation of androgen receptor signaling pathway regulation of osteoblast differentiation regulation of skeletal muscle cell differentiation regulation of transcription by RNA polymerase II regulation of viral genome replication ribonucleoprotein complex ribonucleoprotein complex binding transcription coregulator activity	GO:0000122 GO:0000380 GO:0000381 GO:0000956 GO:0001837 GO:0003712 GO:0003723 GO:0003724 GO:0003730 GO:0005516 GO:0005524 GO:0005634 GO:0005730 GO:0005737 GO:0006357 GO:0006606 GO:0007623 GO:0009299 GO:0016607 GO:0016787 GO:0019899 GO:0030509 GO:0030520 GO:0030521 GO:0031053 GO:0035500 GO:0036002 GO:0043021 GO:0043517 GO:0045069 GO:0045445 GO:0045667 GO:0045893 GO:0046332 GO:0048306 GO:0050681 GO:0060765 GO:0061614 GO:0070412 GO:0070878 GO:0071013 GO:0072332 GO:1990841 GO:1990904 GO:2001014
Mago homolog B, exon junction complex core component	A0A023T778	Magohb	Mus musculus	10090	U2-type catalytic step 1 spliceosome U2-type precatalytic spliceosome exon-exon junction subcomplex mago-y14 mRNA splicing, via spliceosome neuronal cell body nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	GO:0000184 GO:0000398 GO:0043025 GO:0071005 GO:0071006 GO:1990501
BTB/POZ domain-containing protein KCTD12	Q96CX2	KCTD12	Homo sapiens	9606	RNA binding cell projection identical protein binding postsynaptic membrane presynaptic membrane protein homooligomerization receptor complex regulation of G protein-coupled receptor signaling pathway	GO:0003723 GO:0008277 GO:0042734 GO:0042802 GO:0042995 GO:0043235 GO:0045211 GO:0051260
STE20-like serine/threonine-protein kinase	Q9H2G2	SLK	Homo sapiens	9606	ATP binding apoptotic process cadherin binding cell leading edge cytoplasm cytoplasmic microtubule organization cytosol extracellular exosome identical protein binding perinuclear region of cytoplasm protein autophosphorylation protein homodimerization activity protein serine kinase activity protein serine/threonine kinase activity regulation of apoptotic process regulation of cell migration regulation of focal adhesion assembly	GO:0004674 GO:0005524 GO:0005737 GO:0005829 GO:0006915 GO:0030334 GO:0031122 GO:0031252 GO:0042802 GO:0042803 GO:0042981 GO:0045296 GO:0046777 GO:0048471 GO:0051893 GO:0070062 GO:0106310
SNF-related serine/threonine-protein kinase	Q9NRH2	SNRK	Homo sapiens	9606	ATP binding intracellular signal transduction magnesium ion binding myeloid cell differentiation nucleus protein phosphorylation protein serine kinase activity protein serine/threonine kinase activity	GO:0000287 GO:0004674 GO:0005524 GO:0005634 GO:0006468 GO:0030099 GO:0035556 GO:0106310
ELAV-like protein 2	Q12926	ELAVL2	Homo sapiens	9606	RNA binding mRNA 3'-UTR binding regulation of DNA-templated transcription ribonucleoprotein complex	GO:0003723 GO:0003730 GO:0006355 GO:1990904