GlyCosmos Portal

GlyCosmos Glycoproteins

Integrated list of glycoproteins extracted from UniProt and annotated with glycosylation data from GlyGen and GlyConnect. For each entry, information such as glycosylation site, glycans, diseases, 3D structures, and pathway information are available.

Database	Last Updated
GlyConnect	April 19, 2023
GlycoProtDB	October 1, 2021
GlyGen	October 2, 2023
Human Protein Atlas	June 19, 2023 (Protein Atlas version 23)
MCAW-DB	July 10, 2019
The O-GlcNAc Database	April 10, 2023 (v1.3)
Reactome	February 28, 2024 (Version 87)
UniProt	December 27, 2023

Protein Name ▲	UniProt ID	Gene Symbol	Species	Taxonomy ID	No. of Glycosylation Sites	GO Labels	GO IDs
tRNA wybutosine-synthesizing protein 2 homolog	Q53H54	TRMT12	Homo sapiens	9606	3	S-adenosylmethionine-dependent methyltransferase activity cytoplasm tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity tRNA methylation tRNA methyltransferase activity wybutosine biosynthetic process	GO:0005737 GO:0008175 GO:0008757 GO:0030488 GO:0031591 GO:0102522
tRNA wybutosine-synthesizing protein 4	O60294	LCMT2	Homo sapiens	9606	1	S-adenosylmethionine-dependent methyltransferase activity cytoplasm tRNA methylation tRNA methyltransferase activity tRNA modification wybutosine biosynthetic process	GO:0005737 GO:0006400 GO:0008175 GO:0008757 GO:0030488 GO:0031591
tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase	V4ZR02	TGVEG_273430	Toxoplasma gondii VEG	432359		RNA binding S-adenosylmethionine-dependent methyltransferase activity methylation tRNA modification	GO:0003723 GO:0006400 GO:0008757 GO:0032259
tRNA-binding domain-containing protein	Q4DH63	Tc00.1047053509207.50	Trypanosoma cruzi strain CL Brener	353153		tRNA binding	GO:0000049
tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like	O95620	DUS4L	Homo sapiens	9606		flavin adenine dinucleotide binding tRNA dihydrouridine synthase activity tRNA dihydrouridine synthesis tRNA-dihydrouridine20a synthase activity tRNA-dihydrouridine20b synthase activity	GO:0002943 GO:0017150 GO:0050660 GO:0102266 GO:0102267
tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like	Q96G46	DUS3L	Homo sapiens	9606		RNA binding flavin adenine dinucleotide binding mRNA dihydrouridine synthase activity mRNA processing metal ion binding regulation of translation tRNA dihydrouridine synthase activity tRNA dihydrouridine synthesis	GO:0002943 GO:0003723 GO:0006397 GO:0006417 GO:0017150 GO:0046872 GO:0050660 GO:0106414
tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like	Q91XI1	Dus3l	Mus musculus	10090		flavin adenine dinucleotide binding mRNA dihydrouridine synthase activity mRNA processing metal ion binding regulation of translation tRNA dihydrouridine synthase activity tRNA dihydrouridine synthesis	GO:0002943 GO:0006397 GO:0006417 GO:0017150 GO:0046872 GO:0050660 GO:0106414
tRNA-splicing endonuclease subunit SEN34	P39707	SEN34	Saccharomyces cerevisiae S288C	559292	2	endomembrane system lyase activity mitochondrial outer membrane mitochondrion nucleic acid binding tRNA-intron endonuclease activity tRNA-intron endonuclease complex tRNA-type intron splice site recognition and cleavage	GO:0000213 GO:0000214 GO:0000379 GO:0003676 GO:0005739 GO:0005741 GO:0012505 GO:0016829
tRNA-splicing endonuclease subunit Sen15	Q8WW01	TSEN15	Homo sapiens	9606		mRNA processing nucleic acid binding nucleolus nucleoplasm tRNA splicing, via endonucleolytic cleavage and ligation	GO:0003676 GO:0005654 GO:0005730 GO:0006388 GO:0006397
tRNA-splicing endonuclease subunit Sen2	Q8NCE0	TSEN2	Homo sapiens	9606		centrosome cytosol lyase activity mRNA processing nucleic acid binding nucleolus nucleoplasm tRNA splicing, via endonucleolytic cleavage and ligation tRNA-intron endonuclease activity tRNA-intron endonuclease complex tRNA-type intron splice site recognition and cleavage	GO:0000213 GO:0000214 GO:0000379 GO:0003676 GO:0005654 GO:0005730 GO:0005813 GO:0005829 GO:0006388 GO:0006397 GO:0016829