GlyCosmos Portal

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Nigrin b

Summary

Organism: Sambucus nigra (European elder)

External Links

UniProt

P33183

UniLectin

P33183

CarboGrove

1217

Annotation

Keyword

3D-structure
Direct protein sequencing
Disulfide bond
Glycoprotein
Hydrolase
Lectin
Plant defense
Protein synthesis inhibitor
Repeat
Signal
Toxin

Gene Ontology (GO)

Displaying **all 2** entries
GO Term
defense response
negative regulation of translation

Displaying **all 3** entries
GO Term
carbohydrate binding
toxin activity
rRNA N-glycosylase activity

Annotation information from UniProt.

CarboGrove

Lectin Name: Sambucus Nigra Agglutinin 2
Common Name: SNA-II

Automated Analysis report (Top 10 high affinity glycans)

Array Source

CFG

Protein Source

EY Labs

Concentration (ug/mL)

GlyTouCan ID	Binding Intensity	Stdev
G60230HH	18208.25	2174.556884765625
G55220VL	15855.7099609375	1311.030029296875
G80966KZ	15262.8203125	1181.427978515625
G40702WU	13691.9501953125	2427.56005859375
G63337SS	10800.4404296875	1657.23095703125
G22768VO	8927.287109375	1147.302978515625
G22768VO	6298.365234375	1057.425048828125
G62112AO	4638.0	169.2574005126953125
G82348BZ	4567.9130859375	534.48919677734375
G69411IG	4234.85009765625	95.68450164794921875

GlyTouCan ID	Binding Intensity	Stdev
G63337SS	21529.310546875	1064.9730224609375
G80966KZ	13446.990234375	422.390899658203125
G82348BZ	12001.830078125	2764.406982421875
G60230HH	9648.4765625	757.28729248046875
G40702WU	8672.72265625	536.2025146484375
G55220VL	7237.5908203125	995.42120361328125
G22768VO	6412.1181640625	445.049591064453125
G62112AO	3631.85302734375	675.5718994140625
G94435QH	2985.1220703125	178.809906005859375
G22768VO	2902.31298828125	301.25189208984375

GlyTouCan ID	Binding Intensity	Stdev
G82348BZ	45773.55078125	5853.81103515625
G91532KA	41047.03125	3288.366943359375
G80966KZ	40989.76953125	1122.3590087890625
G40702WU	40344.3203125	1451.14501953125
G63337SS	40215.3203125	656.5166015625
G55220VL	39359.8203125	1015.0150146484375
G69411IG	37658.76171875	3036.916015625
G22768VO	37008.2109375	3184.425048828125
G22768VO	36826.62890625	1980.47705078125
G60230HH	36826.28125	1800.094970703125

GlyTouCan ID	Binding Intensity	Stdev
G03229RU	50298.7109375	10118.91015625
G82348BZ	50295.25	6990.0400390625
G91532KA	44805.859375	9478.2451171875
G69411IG	40821.3515625	8385.0361328125
G22768VO	38865.62890625	2837.48291015625
G63337SS	37757.73046875	827.756591796875
G80966KZ	36932.62890625	2752.924072265625
G60230HH	36832.578125	4075.45703125
G98465JN	36438.51953125	4047.843017578125
G91532KA	35938.96875	1293.6619873046875

CarboGrove View

MCAW-DB (Glycan Recognition Profile)

MCAW-DB is a database whereby users can view the multiple alignment analysis results obtained from the MCAW tool, which can computationally find common glycan substructures among a group of glycan structures. The data in MCAW-DB are analysis results of glycan array experiments; those glycans having higher binding affinity to glycan binding proteins (GBPs) have been analyzed and can be viewed as “glycan recognition profiles”. Currently, this database provides published analysis results of glycan array data from the Consortium for Functional Glycomics (CFG).