MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides
| Source | Last Updated |
|---|---|
| MatrixDB | May 10, 2022 |
| Molecule | Molecule Name | Molecule Species | Partner | Partner Name ▲ | Partner Species |
|---|---|---|---|---|---|
| P37237 | Fgf8 | Mus musculus | GAG_6 | Chondroitin Sulfate D | |
| P09038 | FGF2 | Homo sapiens | GAG_6 | Chondroitin Sulfate D | |
| PFRAG_12_human | Beta-amyloid peptide 1-42 | Homo sapiens | P36544 | Chrna7 | Homo sapiens |
| GAG_1 | Heparin | P20909 | Col11a1 | Rattus norvegicus | |
| GAG_1 | Heparin | Q28083 | Col11a1 | Bos taurus | |
| GAG_2 | Heparan sulfate | P20909 | Col11a1 | Rattus norvegicus | |
| GAG_1 | Heparin | Q32S24 | Col11a2 | Bos taurus | |
| GAG_1 | Heparin | P02459 | Col2a1 | Bos taurus | |
| P02461-1 | Col3a1 | Homo sapiens | P02461-1 | Col3a1 | Homo sapiens |
| MULT_3_bovine | Collagen-I | Bos taurus | P20908 | Col5a1 | Homo sapiens |
| MULT_8_human | Collagen-VI | Homo sapiens | P20908 | Col5a1 | Homo sapiens |
| MULT_97_human | TGF beta 1 | Homo sapiens | P20908 | Col5a1 | Homo sapiens |
| GAG_1 | Heparin | P20908 | Col5a1 | Homo sapiens | |
| PFRAG_101_human | Lysyl oxidase propeptide | Homo sapiens | P12109 | Col6a1 | Homo sapiens |
| GAG_1 | Heparin | P20849 | Col9a1 | Homo sapiens | |
| P07214 | SPARC | Mus musculus | MULT_3_human | Collagen-I | Homo sapiens |
| P07996 | Thbs1 | Homo sapiens | MULT_3_human | Collagen-I | Homo sapiens |
| P08253 | Mmp2 | Homo sapiens | MULT_3_human | Collagen-I | Homo sapiens |
| P20908 | Col5a1 | Homo sapiens | MULT_3_mouse | Collagen-I | Mus musculus |
| P56199 | Itga1 | Homo sapiens | MULT_3_rat | Collagen-I | Rattus norvegicus |
| P17301 | Itga2 | Homo sapiens | MULT_3_rat | Collagen-I | Rattus norvegicus |
| P21980 | Tgm2 | Homo sapiens | MULT_3_human | Collagen-I | Homo sapiens |
| Q6GTX8 | Lair1 | Homo sapiens | MULT_3_rat | Collagen-I | Rattus norvegicus |
| MULT_3_bovine | Collagen-I | Bos taurus | MULT_3_bovine | Collagen-I | Bos taurus |
| MULT_8_human | Collagen-VI | Homo sapiens | MULT_3_bovine | Collagen-I | Bos taurus |
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
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Last updated: December 8, 2025