MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides
| Source | Last Updated |
|---|---|
| MatrixDB | May 10, 2022 |
| Molecule | Molecule Name | Molecule Species ▼ | Partner | Partner Name | Partner Species |
|---|---|---|---|---|---|
| PFRAG_12_human | Beta-amyloid peptide 1-42 | Homo sapiens | GAG_4 | Chondroitin Sulfate A | |
| PFRAG_12_human | Beta-amyloid peptide 1-42 | Homo sapiens | GAG_9 | Hyaluronan | |
| PFRAG_1_human | Endostatin | Homo sapiens | GAG_1 | Heparin | |
| PFRAG_1_human | Endostatin | Homo sapiens | GAG_2 | Heparan sulfate | |
| PFRAG_1_human | Endostatin | Homo sapiens | GAG_3 | Dermatan Sulfate | |
| PFRAG_1_human | Endostatin | Homo sapiens | GAG_4 | Chondroitin Sulfate A | |
| PFRAG_1_human | Endostatin | Homo sapiens | LIP_1 | Glycolipid Sulfatide | |
| PFRAG_6_human | Endorepellin | Homo sapiens | CAT_3 | Calcium | |
| PFRAG_75_human | Lymphotactin | Homo sapiens | GAG_1 | Heparin | |
| P38567 | Spam1 | Homo sapiens | GAG_9 | Hyaluronan | |
| Q92784-1 | Dpf3 | Homo sapiens | PFRAG_63_human | Nuclear factor NF-kappa-B p50 subunit | Homo sapiens |
| Q8N3Y1-2 | Fbxw8 | Homo sapiens | P63208-1 | Skp1 | Homo sapiens |
| Q8IY67-1 | Raver1 | Homo sapiens | P18206-2 | Vcl | Homo sapiens |
| Q96QV1-1 | Hhip | Homo sapiens | Q96QV1-1 | Hhip | Homo sapiens |
| P60484-1 | Pten | Homo sapiens | P60484-1 | Pten | Homo sapiens |
| Q6ZMJ4-1 | Il34 | Homo sapiens | Q6ZMJ4-1 | Il34 | Homo sapiens |
| Q8NBP7-1 | Pcsk9 | Homo sapiens | Q8NBP7-1 | Pcsk9 | Homo sapiens |
| Q9NZ94-2 | Nlgn3 | Homo sapiens | P07602-3 | PSAP | Homo sapiens |
| Q9NZ94-2 | Nlgn3 | Homo sapiens | P0DN86-1 | CGB3 | Homo sapiens |
| Q9NZ94-2 | Nlgn3 | Homo sapiens | P11464-4 | PSG1 | Homo sapiens |
| Q9NZ94-2 | Nlgn3 | Homo sapiens | Q00888-1 | PSG4 | Homo sapiens |
| Q9NZ94-2 | Nlgn3 | Homo sapiens | Q9UQ72-1 | PSG11 | Homo sapiens |
| Q9NZ94-2 | Nlgn3 | Homo sapiens | P68104-1 | Eef1a1 | Homo sapiens |
| Q9UNE7-1 | Stub1 | Homo sapiens | P11142-1 | Hspa8 | Homo sapiens |
| P61073 | CXCR4 | Homo sapiens | PFRAG_25_HIV1 | Surface protein gp120 | Human immunodeficiency virus type 1 group M subtype B |
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
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Last updated: December 8, 2025