MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides
| Source | Last Updated |
|---|---|
| MatrixDB | May 10, 2022 |
| Molecule | Molecule Name | Molecule Species | Partner ▲ | Partner Name | Partner Species |
|---|---|---|---|---|---|
| MULT_4_VAR1_human | Collagen-IV v1 | Homo sapiens | PFRAG_1_human | Endostatin | Homo sapiens |
| MULT_8_human | Collagen-VI | Homo sapiens | PFRAG_1_human | Endostatin | Homo sapiens |
| PFRAG_12_human | Beta-amyloid peptide 1-42 | Homo sapiens | PFRAG_1_human | Endostatin | Homo sapiens |
| PFRAG_1_human | Endostatin | Homo sapiens | PFRAG_1_human | Endostatin | Homo sapiens |
| PFRAG_6_human | Endorepellin | Homo sapiens | PFRAG_1_human | Endostatin | Homo sapiens |
| P08587 | Tgm2 | PFRAG_1_human | Endostatin | Homo sapiens | |
| CAT_1 | Zinc | PFRAG_1_human | Endostatin | Homo sapiens | |
| GAG_2 | Heparan sulfate | PFRAG_1_human | Endostatin | Homo sapiens | |
| P08253 | Mmp2 | Homo sapiens | PFRAG_1_mouse | Endostatin | Mus musculus |
| P17948 | Flt1 | Homo sapiens | PFRAG_1_mouse | Endostatin | Mus musculus |
| P35968 | kdr | Homo sapiens | PFRAG_1_mouse | Endostatin | Mus musculus |
| P98095 | Fbln2 | Homo sapiens | PFRAG_1_mouse | Endostatin | Mus musculus |
| P14543 | Nid1 | Homo sapiens | PFRAG_1_mouse | Endostatin | Mus musculus |
| Q14112 | Nid2 | Homo sapiens | PFRAG_1_mouse | Endostatin | Mus musculus |
| Q08879 | Fbln1 | Mus musculus | PFRAG_1_mouse | Endostatin | Mus musculus |
| Q05793 | Hspg2 | Mus musculus | PFRAG_1_mouse | Endostatin | Mus musculus |
| GAG_2 | Heparan sulfate | PFRAG_1_mouse | Endostatin | Mus musculus | |
| PFRAG_101_human | Lysyl oxidase propeptide | Homo sapiens | PFRAG_22_human | Anastellin | Homo sapiens |
| P61073 | CXCR4 | Homo sapiens | PFRAG_25_HIV1 | Surface protein gp120 | Human immunodeficiency virus type 1 group M subtype B |
| Q9Y6Q6 | Tnfrsf11a | Homo sapiens | PFRAG_26_human | Tumor necrosis factor ligand superfamily member 11, soluble form | Homo sapiens |
| P68104 | Eef1a1 | Homo sapiens | PFRAG_27_human | Serine protease HTRA2, mitochondrial | Homo sapiens |
| P00740 | F9 | Homo sapiens | PFRAG_29_human | Factor VIIIa heavy chain, 200 kDa isoform | Homo sapiens |
| P98095 | Fbln2 | Homo sapiens | PFRAG_2_mouse | Restin | Mus musculus |
| P14543 | Nid1 | Homo sapiens | PFRAG_2_mouse | Restin | Mus musculus |
| Q14112 | Nid2 | Homo sapiens | PFRAG_2_mouse | Restin | Mus musculus |
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
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Last updated: December 8, 2025