MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides
| Source | Last Updated |
|---|---|
| MatrixDB | May 10, 2022 |
| Molecule | Molecule Name | Molecule Species ▲ | Partner | Partner Name | Partner Species |
|---|---|---|---|---|---|
| Q08879 | Fbln1 | Mus musculus | PFRAG_2_mouse | Restin | Mus musculus |
| Q08879 | Fbln1 | Mus musculus | PFRAG_3_mouse | NC1-XVIII | Mus musculus |
| Q8R2Z5 | Vwa1 | Mus musculus | MULT_1_mouse | Laminin-111 | Mus musculus |
| P54830-1 | Ptpn5 | Mus musculus | Q16539-1 | Mapk14 | Homo sapiens |
| Q05793 | Hspg2 | Mus musculus | PFRAG_1_mouse | Endostatin | Mus musculus |
| Q05793 | Hspg2 | Mus musculus | PFRAG_2_mouse | Restin | Mus musculus |
| Q05793 | Hspg2 | Mus musculus | PFRAG_3_mouse | NC1-XVIII | Mus musculus |
| Q60841 | RELN | Mus musculus | PFRAG_12_human | Beta-amyloid peptide 1-42 | Homo sapiens |
| O35235-1 | Tnfsf11 | Mus musculus | O35235-1 | Tnfsf11 | Mus musculus |
| O35464-1 | Sema6a | Mus musculus | O35464-1 | Sema6a | Mus musculus |
| P37889-1 | Fbln2 | Mus musculus | Q62406-1 | Irak1 | Mus musculus |
| P07214 | SPARC | Mus musculus | GAG_1 | Heparin | |
| P07214 | SPARC | Mus musculus | GAG_3 | Dermatan Sulfate | |
| P37237 | Fgf8 | Mus musculus | GAG_6 | Chondroitin Sulfate D | |
| O54943 | Per2 | Mus musculus | CAT_1 | Zinc | |
| MULT_1_mouse | Laminin-111 | Mus musculus | GAG_1 | Heparin | |
| MULT_1_mouse | Laminin-111 | Mus musculus | GAG_2 | Heparan sulfate | |
| MULT_1_mouse | Laminin-111 | Mus musculus | GAG_3 | Dermatan Sulfate | |
| MULT_2_mouse | Laminin-111_Nidogen-1 | Mus musculus | LIP_1 | Glycolipid Sulfatide | |
| MULT_4_VAR1_mouse | Collagen-IV v1 | Mus musculus | GAG_1 | Heparin | |
| PFRAG_1_mouse | Endostatin | Mus musculus | GAG_1 | Heparin | |
| PFRAG_1_mouse | Endostatin | Mus musculus | LIP_1 | Glycolipid Sulfatide | |
| PFRAG_3_mouse | NC1-XVIII | Mus musculus | GAG_1 | Heparin | |
| PFRAG_3_mouse | NC1-XVIII | Mus musculus | LIP_1 | Glycolipid Sulfatide | |
| PFRAG_6_mouse | Endorepellin | Mus musculus | GAG_1 | Heparin |
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
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Last updated: December 8, 2025