MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides
| Source | Last Updated |
|---|---|
| MatrixDB | May 10, 2022 |
| Molecule | Molecule Name | Molecule Species | Partner | Partner Name ▲ | Partner Species |
|---|---|---|---|---|---|
| GAG_1 | Heparin | P21588 | NT5E | Rattus norvegicus | |
| GAG_1 | Heparin | M0RBP3 | NXPE1 | Rattus norvegicus | |
| PFRAG_95_mouse | CTF1-alpha | Mus musculus | P28663 | Napb | Mus musculus |
| P13591-1 | Ncam1 | Homo sapiens | P13591-1 | Ncam1 | Homo sapiens |
| PFRAG_12_human | Beta-amyloid peptide 1-42 | Homo sapiens | P55066 | Ncan | Mus musculus |
| GAG_1 | Heparin | P55067 | Ncan | Rattus norvegicus | |
| GAG_9 | Hyaluronan | P55067 | Ncan | Rattus norvegicus | |
| Q13557-8 | camk2d | Homo sapiens | Q9Y2A7-2 | Nckap1 | Homo sapiens |
| P46379-1 | Bag6 | Homo sapiens | O14931-1 | Ncr3 | Homo sapiens |
| GAG_1 | Heparin | Q8CGU6 | Ncstn | Rattus norvegicus | |
| O95197-3 | Rtn3 | Homo sapiens | Q9ULP0-2 | Ndrg4 | Homo sapiens |
| Q96DZ9-2 | Cmtm5 | Homo sapiens | Q9ULP0-2 | Ndrg4 | Homo sapiens |
| O75521-2 | Eci2 | Homo sapiens | Q96JN8-2 | Neurl4 | Homo sapiens |
| Q05086-2 | Ube3a | Homo sapiens | Q96JN8-2 | Neurl4 | Homo sapiens |
| Q05086-3 | Ube3a | Homo sapiens | Q96JN8-2 | Neurl4 | Homo sapiens |
| Q05086-1 | Ube3a | Homo sapiens | Q96JN8-2 | Neurl4 | Homo sapiens |
| P19838-1 | NFKB1 | Homo sapiens | Q00653-1 | Nfkb2 | Homo sapiens |
| PFRAG_40_human | Beta-nerve growth factor | Homo sapiens | P08138 | Ngfr | Homo sapiens |
| MULT_78_human | PDGF-BB | Homo sapiens | P10493 | Nid1 | Mus musculus |
| MULT_80_human | PDGF-AA | Homo sapiens | P10493 | Nid1 | Mus musculus |
| O43278-1 | Spint1 | Homo sapiens | Q9NZ94-2 | Nlgn3 | Homo sapiens |
| P21333-2 | Flna | Homo sapiens | Q9NZ94-2 | Nlgn3 | Homo sapiens |
| Q96JN8-2 | Neurl4 | Homo sapiens | Q9Y5B8-2 | Nme7 | Homo sapiens |
| Q96RS6-2 | NUDCD1 | Homo sapiens | Q9Y5B8-2 | Nme7 | Homo sapiens |
| Q96RS6-3 | NUDCD1 | Homo sapiens | P35228-2 | Nos2 | Homo sapiens |
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
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Last updated: December 8, 2025