MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides
| Source | Last Updated |
|---|---|
| MatrixDB | May 10, 2022 |
| Molecule | Molecule Name | Molecule Species | Partner | Partner Name ▲ | Partner Species |
|---|---|---|---|---|---|
| GAG_1 | Heparin | P02776 | PF4 | Homo sapiens | |
| GAG_2 | Heparan sulfate | P02776 | PF4 | Homo sapiens | |
| PFRAG_48_human | Major prion protein | Homo sapiens | Q61753 | PHGDH | Mus musculus |
| PFRAG_13_human | Beta-amyloid peptide 1-40 | Homo sapiens | Q5JRX3-1 | PITRM1 | Homo sapiens |
| GAG_1 | Heparin | Q01177 | PLG | Rattus norvegicus | |
| Q92854-1 | Sema4d | Homo sapiens | O43157-1 | PLXNB1 | Homo sapiens |
| Q96JN8-2 | Neurl4 | Homo sapiens | P0CAP2-3 | POLR2M | Homo sapiens |
| PFRAG_48_human | Major prion protein | Homo sapiens | P17742 | PPIA | Mus musculus |
| P07602-1 | PSAP | Homo sapiens | P35030-3 | PRSS3 | Homo sapiens |
| P49862-1 | Klk7 | Homo sapiens | P07602-1 | PSAP | Homo sapiens |
| P07602-1 | PSAP | Homo sapiens | P07602-1 | PSAP | Homo sapiens |
| Q9NZ94-2 | Nlgn3 | Homo sapiens | P07602-3 | PSAP | Homo sapiens |
| Q9NZ94-2 | Nlgn3 | Homo sapiens | P11464-4 | PSG1 | Homo sapiens |
| Q9NZ94-2 | Nlgn3 | Homo sapiens | Q9UQ72-1 | PSG11 | Homo sapiens |
| Q9NZ94-2 | Nlgn3 | Homo sapiens | Q00888-1 | PSG4 | Homo sapiens |
| Q6UY14-3 | Adamtsl4 | Homo sapiens | P43115-12 | PTGER3 | Homo sapiens |
| MULT_1_human | Laminin-111 | Homo sapiens | Q15113 | Pcolce | Homo sapiens |
| MULT_3_human | Collagen-I | Homo sapiens | Q15113 | Pcolce | Homo sapiens |
| PFRAG_12_human | Beta-amyloid peptide 1-42 | Homo sapiens | Q15113 | Pcolce | Homo sapiens |
| PFRAG_1_human | Endostatin | Homo sapiens | Q15113 | Pcolce | Homo sapiens |
| GAG_1 | Heparin | Q15113 | Pcolce | Homo sapiens | |
| Q8NBP7-1 | Pcsk9 | Homo sapiens | Q8NBP7-1 | Pcsk9 | Homo sapiens |
| CAT_3 | Calcium | P12815-1 | Pdcd6 | Mus musculus | |
| CAT_3 | Calcium | P12815-2 | Pdcd6 | Mus musculus | |
| Q9WU78-1 | Pdcd6ip | Mus musculus | Q9WU78-1 | Pdcd6ip | Mus musculus |
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
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Last updated: December 8, 2025