MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides
| Source | Last Updated |
|---|---|
| MatrixDB | May 10, 2022 |
| Molecule | Molecule Name | Molecule Species | Partner ▲ | Partner Name | Partner Species |
|---|---|---|---|---|---|
| GAG_1 | Heparin | MULT_6_bovine | Collagen-IX | Bos taurus | |
| MULT_1_mouse | Laminin-111 | Mus musculus | MULT_71_mouse | Integrin-alpha6beta4 | Mus musculus |
| MULT_28_mouse | Laminin-121 | Mus musculus | MULT_71_mouse | Integrin-alpha6beta4 | Mus musculus |
| MULT_30_VAR1_mouse | Laminin-3A32 | Mus musculus | MULT_71_mouse | Integrin-alpha6beta4 | Mus musculus |
| MULT_10_bovine | Collagen-III | Bos taurus | MULT_78_human | PDGF-BB | Homo sapiens |
| MULT_3_sheep | Collagen-I | Ovis aries | MULT_78_human | PDGF-BB | Homo sapiens |
| MULT_4_VAR1_human | Collagen-IV v1 | Homo sapiens | MULT_78_human | PDGF-BB | Homo sapiens |
| MULT_8_human | Collagen-VI | Homo sapiens | MULT_78_human | PDGF-BB | Homo sapiens |
| P07214 | SPARC | Mus musculus | MULT_7_VAR1_bovine | Collagen-XI v1 | Bos taurus |
| P07996 | Thbs1 | Homo sapiens | MULT_7_VAR1_bovine | Collagen-XI v1 | Bos taurus |
| P21980 | Tgm2 | Homo sapiens | MULT_7_VAR1_bovine | Collagen-XI v1 | Bos taurus |
| PFRAG_12_human | Beta-amyloid peptide 1-42 | Homo sapiens | MULT_7_VAR1_bovine | Collagen-XI v1 | Bos taurus |
| P08587 | Tgm2 | MULT_7_VAR1_bovine | Collagen-XI v1 | Bos taurus | |
| GAG_1 | Heparin | MULT_7_VAR1_bovine | Collagen-XI v1 | Bos taurus | |
| P21810 | BGN | Homo sapiens | MULT_81_VAR1_mouse | VEGF-A165 | Mus musculus |
| P11226 | Mbl2 | Homo sapiens | MULT_82_human | Complement 1Q | Homo sapiens |
| P26022 | Ptx3 | Homo sapiens | MULT_82_human | Complement 1Q | Homo sapiens |
| P20138-1 | Cd33 | Homo sapiens | MULT_82_human | Complement 1Q | Homo sapiens |
| P20138-3 | Cd33 | Homo sapiens | MULT_82_human | Complement 1Q | Homo sapiens |
| Q6GTX8 | Lair1 | Homo sapiens | MULT_82_human | Complement 1Q | Homo sapiens |
| P05156 | Cfi | Homo sapiens | MULT_84_human | Complement C3 | Homo sapiens |
| P26022 | Ptx3 | Homo sapiens | MULT_84_human | Complement C3 | Homo sapiens |
| P07996 | Thbs1 | Homo sapiens | MULT_8_human | Collagen-VI | Homo sapiens |
| P21980 | Tgm2 | Homo sapiens | MULT_8_human | Collagen-VI | Homo sapiens |
| Q15113 | Pcolce | Homo sapiens | MULT_8_human | Collagen-VI | Homo sapiens |
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
This work is licensed under Creative Commons Attribution 4.0 International
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Last updated: December 8, 2025