MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides
| Source | Last Updated |
|---|---|
| MatrixDB | May 10, 2022 |
| Molecule | Molecule Name | Molecule Species | Partner ▼ | Partner Name | Partner Species |
|---|---|---|---|---|---|
| MULT_23_human | Fibrinogen | Homo sapiens | SPEP_4 | CRLKEKHC | |
| MULT_82_human | Complement 1Q | Homo sapiens | SPEP_4 | CRLKEKHC | |
| GAG_1 | Heparin | SPEP_1 | Boc-DON-Gln-Ile-Val-OMe | ||
| GAG_1 | Heparin | SMALLMOL_2 | 1,3-dimethyl-2-[2-oxopropyl thio]imidazolium chloride | ||
| PFRAG_95_mouse | CTF1-alpha | Mus musculus | Q9Z2Y3 | Homer1 | Mus musculus |
| GAG_1 | Heparin | Q9Z2H4 | Lgr4 | Rattus norvegicus | |
| PFRAG_95_mouse | CTF1-alpha | Mus musculus | Q9Z1G4 | Atp6v0a1 | Mus musculus |
| GAG_1 | Heparin | Q9Z0V5 | Prdx4 | Rattus norvegicus | |
| GAG_1 | Heparin | Q9Z0E2 | CHRD | Mus musculus | |
| O75445-1 | Ush2a | Homo sapiens | Q9Y6N9-4 | Ush1c | Homo sapiens |
| Q7Z6G3-2 | Necab2 | Homo sapiens | Q9Y6C2-2 | Emilin1 | Homo sapiens |
| P15692-12 | Vegfa | Homo sapiens | Q9Y5Z9-1 | Ubiad1 | Homo sapiens |
| P15692-14 | Vegfa | Homo sapiens | Q9Y5Z9-1 | Ubiad1 | Homo sapiens |
| Q13557-8 | camk2d | Homo sapiens | Q9Y5V3-2 | MAGED1 | Homo sapiens |
| Q96RS6-3 | NUDCD1 | Homo sapiens | Q9Y5V3-2 | MAGED1 | Homo sapiens |
| Q96JN8-2 | Neurl4 | Homo sapiens | Q9Y5T5-2 | Usp16 | Homo sapiens |
| Q05086-2 | Ube3a | Homo sapiens | Q9Y5K5-2 | UCHL5 | Homo sapiens |
| Q05086-3 | Ube3a | Homo sapiens | Q9Y5K5-2 | UCHL5 | Homo sapiens |
| Q05086-1 | Ube3a | Homo sapiens | Q9Y5K5-2 | UCHL5 | Homo sapiens |
| Q96JN8-2 | Neurl4 | Homo sapiens | Q9Y5B8-2 | Nme7 | Homo sapiens |
| Q96RS6-2 | NUDCD1 | Homo sapiens | Q9Y5B8-2 | Nme7 | Homo sapiens |
| Q6UY14-3 | Adamtsl4 | Homo sapiens | Q9Y4X0-3 | AMMECR1 | Homo sapiens |
| Q96JN8-2 | Neurl4 | Homo sapiens | Q9Y4I1-2 | Myo5a | Homo sapiens |
| Q96JN8-2 | Neurl4 | Homo sapiens | Q9Y4E8-2 | Usp15 | Homo sapiens |
| Q96JN8-2 | Neurl4 | Homo sapiens | Q9Y4E5-2 | Znf451 | Homo sapiens |
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
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Last updated: December 8, 2025