PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding ▼ | PubMed ID |
---|---|---|---|---|---|---|---|
HA
|
Glucose
|
Monosaccharides
|
Intestinal epithelial cells (T84)
|
Glc
|
Not Binding
|
||
HA
|
Fucose
|
Monosaccharides
|
Intestinal epithelial cells (T84)
|
Fuc
|
Not Binding
|
||
35S-labeled or 125I-labeled proteins
|
GgO4 (de-N-acylated)
|
Oligoglycosylceramides
|
Mouse small intestine
|
Gal(b1-3)GalNH2(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
35S-labeled or 125I-labeled proteins
|
Gb4 (Globoside; Globotetraose; P antigen)
|
Oligoglycosylceramides
|
Human erythrocytes
|
GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
35S-labeled or 125I-labeled proteins
|
Gb5 (Forssman glycolipid)
|
Oligoglycosylceramides
|
Dog small intestine
|
GalNAc(a1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
35S-labeled or 125I-labeled proteins
|
isoGb4 (Isoglobotetraosylceramide; iGb4)
|
Oligoglycosylceramides
|
Rat colon carcinoma
|
GalNAc(b1-3)Gal(a1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
35S-labeled or 125I-labeled proteins
|
GgO3 (de-N- acylated)
|
Oligoglycosylceramides
|
Guinea pig erythrocytes
|
GalNH2(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
F1C
|
H5 type 2 pentaglycosylceramide (neolacto-series)
|
Oligoglycosylceramides
|
Human erythrocytes
|
Fuc(a1-2)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
F1C
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Guinea pig erythrocytes
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
F1C
|
nLc4Cer (Neolactotetraosylceramide; Paragloboside)
|
Oligoglycosylceramides
|
Human neutrophils
|
Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01