PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence ▼ | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Unknown
|
Sialic acid (α2,6)
|
Saccharides
|
Most organs including the central nervous system/heart/liver
|
NeuAc(a2-6)
|
Binding
|
||
Unknown
|
NeuAcα2-3GalNAcβ1-4GlcNAc
|
Oligosaccharides
|
NeuAc(a2-3)GalNAc(b1-4)GlcNAc
|
Binding
|
|||
Viral protein
|
NeuAcα2,3-Gal/GalNAc side chains of MAA-binding glycoproteins
|
Glycoproteins
|
Feline kidney(CRFK)/Equine fetal kidney(EFK)/Mouse(McCoy)/Rabbit kidney(RK-13)
|
NeuAc(a2-3)Gal/GalNAc
|
Binding
|
||
Unknown
|
Sialyl-dimeric Lewis x (SdiLex-HSA)
|
Glycoproteins
|
Human serum albumin
|
NeuAc(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc(c)-APD
|
Binding
|
||
SabA (sialic acid-binding adhesin)
|
Sialyl-dimeric Lewis x (SdiLex) (GSL)
|
Monosialoglycosphingolipids
|
NeuAc(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Unknown
|
Sialyl Lewis x (SLex-HSA)
|
Glycoproteins
|
Human serum albumin
|
NeuAc(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc(c)-APD
|
Binding
|
||
Unknown
|
NeuAc-SLex (GSL) (Sialylneolactofucopentaosylcer)
|
Monosialoglycosphingolipids
|
Human colon adenocarcinoma cells (WiDr )
|
NeuAc(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
NeuAc-SLex (GSL) (Sialylneolactofucopentaosylcer)
|
Monosialoglycosphingolipids
|
NeuAc(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Unknown
|
Sialyl Lewis x (SLex) antigen (d18:1,18:0)
|
Oligosaccharides
|
NeuAc(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b
|
Binding
|
|||
Neutrophil-activating proteins (150-kDa)
|
I-active ganglioside
|
Sialoglycosphingolipids
|
Human placenta
|
NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-6)[NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01