Pathogen Adherence to Carbohydrate Database (PACDB)

PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.

Database Last Updated
Pathogen Adherence to Carbohydrate Database (PACDB) June 1, 2016
Species Pathogen Adherence Molecule ▲ Ligand Name Ligand Feature Target Source Glycan Sequence Binding PubMed ID
Adhesins
Gb5 (Forssman glycolipid)
Oligoglycosylceramides
Type-II lung cells, Vascular endothelial cells
GalNAc(a1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
Binding
Adhesins
Gb4 (Globoside; Globotetraose; P antigen)
Oligoglycosylceramides
Erythrocytes
GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
Binding
Adhesins
Asialo-GM2 (Gangliotriosylceramide; GgO3)
Oligoglycosylceramides
Pharyngeal epithelial cells
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
Binding
Adhesins
nLc4Cer (Neolactotetraosylceramide; Paragloboside)
Oligoglycosylceramides
Mucos membranes of the genitourinary tract/rectum/oropharynx/conjunctiva
Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
Binding
Adhesins
Asialo-GM2 (Gangliotriosylceramide; GgO3)
Oligoglycosylceramides
Human epithelial cells (respiratory tract)
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
Binding
Adhesins
Gb4 (Globoside; Globotetraose; P antigen)
Oligoglycosylceramides
Human erythrocytes, Human uroepithelial cells
GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
Binding
Adhesins
unnamed ligand
Oligosaccharides
Human epithelial cells (respiratory tract)
Gal(b1-4)GlcNAc
Binding
Adhesins
GlcNAc(b1-3)Gal sequence
Saccharides
Human endothelial cells
GlcNAc(b1-3)Gal
Binding
Adhesins
GM1
Monosialoglycosphingolipids
Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
Binding
Adhesins
terminal Gal(3SO4) β1- residues
Sulfoglycosphingolipids
Gal(3SO4)(b
Binding
Displaying entries 101 - 110 of 1840 in total

International Collaboration

GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01