GlyCosmos Portal

Pathogen Adherence to Carbohydrate Database (PACDB)

PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.

Database	Last Updated
Pathogen Adherence to Carbohydrate Database (PACDB)	June 1, 2016

Species ▲	Pathogen Adherence Molecule	Ligand Name	Ligand Feature	Target Source	Glycan Sequence	Binding	PubMed ID
Actinomyces viscosus	Unknown	Asialo GM1 (Gangliotetraosylceramide; Gg4; GA1)	Oligoglycosylceramides	Mouse small intestine	Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer	Binding	2358461
Actinomyces viscosus	Unknown	Gb3 (Globotriaosylceramide; Trihexosylceramide; Pk antigen (GSL); CTH)	Oligoglycosylceramides	Human erythrocytes	Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	2358461
Actinomyces viscosus	Unknown	SSEA-3 (GSL) (Galactosyl globoside; Gb5)	Oligoglycosylceramides	Vero cells	Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	2358461
Actinomyces viscosus	Unknown	unnamed ligand	Oligoglycosylceramides	Various sources	Gal(a1-3)[Fuc(a1-2)]Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer	Not Binding	2358461
Actinomyces viscosus	Unknown	unnamed ligand	Oligoglycosylceramides	Various sources	GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer	Not Binding	2358461
Adeno-associated virus	Unknown	Glycoproteins with α2,3 N-linked sialic acid	Glycoproteins		NeuAc(a2-3)Gal(b1-4)GlcNAc	Binding	16940521
Adeno-associated virus	Unknown	NeuAcα2-3GalNAcβ1-4GlcNAc	Oligosaccharides		NeuAc(a2-3)GalNAc(b1-4)GlcNAc	Binding	16940521
Adeno-associated virus	Unknown	Glycoprotein with α2,6 N-linked sialic acid	Glycoproteins		NeuAc(a2-6)Gal(b1-4)GlcNAc	Binding	16940521
Adenovirus	Fibre proteins	HSA glycoconjugates	Glycoproteins	Human corneal epithelial(HEC) cells		Binding	15678425
Anaplasma marginale	"MSP1a, MSP1b, MSP2"	unknown carbohydrate ligand	Saccharides			Binding	16299269